Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40404
         (631 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9ZZQ2 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    36   1.1  
UniRef50_A1ICF9 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_O96694 Cluster: 1-deoxy-D-xylulose 5-phosphate synthase...    33   4.3  

>UniRef50_Q9ZZQ2 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=1; Cyanidioschyzon merolae|Rep: NADH-ubiquinone
           oxidoreductase chain 2 - Cyanidioschyzon merolae (Red
           alga)
          Length = 500

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
 Frame = +2

Query: 320 NVYHITVFFFFNQLHWVFKQFLLIALSFVFLL*GCV*KER------YMAYYIICISLFIV 481
           + Y  + FFF N L W+   FLL+ + +VFL+   +  E+      ++ + +  +S+F++
Sbjct: 71  STYFPSFFFFNNSLKWIKTIFLLVGICYVFLVISNISLEKLNVFEFFLLFILSILSIFLI 130

Query: 482 ICFF 493
           I  F
Sbjct: 131 ISTF 134


>UniRef50_A1ICF9 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Desulfococcus oleovorans Hxd3|Rep: Putative
           uncharacterized protein - Candidatus Desulfococcus
           oleovorans Hxd3
          Length = 478

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -2

Query: 399 DNAINRNCLNTQCN*LKKKKTVM*YTFDEATSELVQMLDALILNHSALL--FEIR*R*NG 226
           +N  N+   N +   L + K  +  TFDEAT++ +Q++D L L  + +L  FEI      
Sbjct: 326 NNDRNKEINNQRLGDLPRVKKSLPLTFDEATNKTIQLIDVLWLKQNTILAAFEI----ES 381

Query: 225 VICIYVNVRHISDRCHSGRHLDL 157
              IY  +  ++D      H+++
Sbjct: 382 TTSIYSGILRMADLIAMQPHINI 404


>UniRef50_O96694 Cluster: 1-deoxy-D-xylulose 5-phosphate synthase;
           n=2; Plasmodium falciparum|Rep: 1-deoxy-D-xylulose
           5-phosphate synthase - Plasmodium falciparum
          Length = 1205

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 620 KNHYLNTAFLKKEKLVTKNVINANVISGKSVSLDDRSLDSNHKKNKSQ 477
           KN+Y N  ++ K K +  NVI+ N ISG   ++  R+   N +K   Q
Sbjct: 93  KNNYSNKLYMDKRKNIN-NVISTNKISGSISNICSRNQKENEQKRNKQ 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,100,842
Number of Sequences: 1657284
Number of extensions: 11109140
Number of successful extensions: 24543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24528
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)