Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40394
         (605 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7VG25 Cluster: Putative uncharacterized protein; n=1; ...    34   3.0  
UniRef50_Q48737 Cluster: Excisionase; n=2; Lactococcus lactis|Re...    33   4.0  
UniRef50_A0DZJ5 Cluster: Chromosome undetermined scaffold_70, wh...    33   4.0  
UniRef50_Q8D2Q7 Cluster: NhaA protein; n=1; Wigglesworthia gloss...    33   5.2  
UniRef50_A6LJ46 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_Q7VG25 Cluster: Putative uncharacterized protein; n=1;
           Helicobacter hepaticus|Rep: Putative uncharacterized
           protein - Helicobacter hepaticus
          Length = 695

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -1

Query: 365 WQQFPVRLAVSSPYI--YFHIFLFKLPTKIS 279
           WQ +PV L + S +I  +F ++L+K+P+K S
Sbjct: 163 WQDYPVLLGICSAFIFGFFTLYLYKIPSKFS 193


>UniRef50_Q48737 Cluster: Excisionase; n=2; Lactococcus lactis|Rep:
           Excisionase - Lactococcus lactis
          Length = 68

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = -2

Query: 574 KTLNNNLYEMKRLQFNIYI 518
           KTLNN+L EM+R +FN+YI
Sbjct: 20  KTLNNDLTEMRRTEFNVYI 38


>UniRef50_A0DZJ5 Cluster: Chromosome undetermined scaffold_70, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_70, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2691

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 15   VDRQLYTV-YKTLL--LRNTIPFFTISLNIFTYYFINLEIKHHQTLHNSSVTF 164
            +D+  YT  Y  +   L+   PFFTI LN +  Y  N+ I+    L +S VTF
Sbjct: 902  LDKSAYTTPYSAVAVTLKKQKPFFTILLNTYDIYLKNVVIQSQNYLVSSDVTF 954


>UniRef50_Q8D2Q7 Cluster: NhaA protein; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           NhaA protein - Wigglesworthia glossinidia brevipalpis
          Length = 396

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 325 ISIFTFFYSNYRLKFRYILNKNVFLFLLGQNKMHMTSVFLIFTDGVLYY 179
           I I  FFYSN+  ++  +L+  V L +L  N + +T +++    G+L +
Sbjct: 170 ILIIAFFYSNHIDQYMILLSTLVILTILSINYLRVTCIYIYIIFGILLW 218


>UniRef50_A6LJ46 Cluster: Putative uncharacterized protein; n=1;
           Thermosipho melanesiensis BI429|Rep: Putative
           uncharacterized protein - Thermosipho melanesiensis
           BI429
          Length = 342

 Score = 32.3 bits (70), Expect = 9.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 18  DRQLYTVYKTLLLRNTIPFFTIS-LNIFTYYFINLEIKHHQTLHNSSVTFNFF 173
           D  +    K L L   IPF+ +S +  F YYFIN  +    ++ +S   F FF
Sbjct: 58  DEMVLVKLKKLFLNILIPFYFMSTVGYFVYYFINRFVSISDSVFSSIFDFLFF 110


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,170,572
Number of Sequences: 1657284
Number of extensions: 10165230
Number of successful extensions: 19987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19973
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)