Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40394
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        28   1.2  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   4.9  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    25   6.5  
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    25   8.6  

>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 319 IFTFFYSNYRLKFRYILNKNVFLFLLGQNKMHMTSVFLIFTDGVLYY**KKLNV 158
           IF+F  S   + F  + NKN +  L       + S+ L+    +LY+  +KLNV
Sbjct: 50  IFSFVISRMIIFFISLFNKNTYCELPAVADAIINSIALVCIIVILYFSSRKLNV 103


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -1

Query: 206 HIYRRCSI---LLIKKIKRYGAIV*SLVMFY 123
           H++RRCS+   LL +K  +Y A+  S+V  +
Sbjct: 614 HVWRRCSVTMLLLSQKAAKYCAVCNSIVAIF 644


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 125 YFQVNKIVGKYIQ*NSKKRYSIPQKQSFIDC 33
           +  +N+I G Y +   K+RYSI   ++F DC
Sbjct: 123 FASINRIYGFYDE--CKRRYSIKLWKTFTDC 151


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 201 LQTVFYIINKKN*TLRSYCVEFGDVLFP 118
           +Q +F ++N+KN  +  YC + G    P
Sbjct: 186 VQNLFNLVNRKNEKVLEYCEQKGIAFIP 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,889
Number of Sequences: 5004
Number of extensions: 48331
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)