Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40391
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.61 
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   1.9  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   7.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   7.5  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.9  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -1

Query: 275  LYIFVWHLPCYQKYLTTLNILRSIFKMLHLFSTDFPLWKT 156
            +Y+ VW L  Y    TT NI  SI   LH      PL  T
Sbjct: 1323 VYLLVWDLIFYHFEETTYNIKLSIINQLHAMDLLRPLLNT 1362


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -2

Query: 334  CLFLFTNNAH*IMIITLTVTYTYLFGICPVTKNISPP*IYYVLFSKCCTCFPLIFLYGKH 155
            C+F +    H   I+ +   + Y FGI  +   +     YY+L     + F   +++GKH
Sbjct: 928  CIFGWFKGGHQTSIVAVIRIWMYSFGIFCLIAGV-----YYILSES--SSFDR-WMHGKH 979

Query: 154  KRNNLTRK 131
            K    TRK
Sbjct: 980  KERGTTRK 987


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 217 YYVLFSKCCTCFPLIFLYGKHKRN 146
           Y+ L + C   FP I++Y   K+N
Sbjct: 226 YFNLLTSCLIIFPSIWIYAIEKKN 249


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 255 SALLPKISHHLEYTTFYFQNVALV 184
           SA  P  SHH+ Y+  +FQ++  V
Sbjct: 219 SAARPPFSHHIVYSDDWFQSIVPV 242


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 524 FLRNLLVYVCFCVMIKFA 471
           ++ +L++YVCFC+    A
Sbjct: 150 YIGSLIIYVCFCISCALA 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,808
Number of Sequences: 5004
Number of extensions: 48556
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)