Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40379
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr ...    40   3e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   8.2  

>SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 68

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 23/50 (46%), Positives = 33/50 (66%)
 Frame = +2

Query: 254 CSGAVERVLNRLKGQGVEDISISLPEQKVSVKSTLSADDLLEIIKKTGKK 403
           C  A++RVL RL   GVED SIS+ +Q+V V +    + + + IKKTGK+
Sbjct: 14  CKNAIDRVLTRL---GVEDKSISVEKQEVIVTTDKPYELVEQTIKKTGKE 60


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 272 RVLNRLKGQGVEDISISLPEQKVS 343
           +VL  LK  G+ D+SIS P+Q++S
Sbjct: 216 QVLEELK-TGISDLSISRPKQRLS 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,660
Number of Sequences: 5004
Number of extensions: 60806
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)