Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40378
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    29   0.72 
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   2.2  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    26   3.8  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   6.7  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   8.9  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   8.9  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
 Frame = +2

Query: 11  GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTE--GIS 184
           G+    CL   GC G G  +L+ +  R    +   A     R +  +    E  E  G+ 
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVG 351

Query: 185 LTVFETFLPLS--PVGLLLQQLPDEREGFANSSG 280
                 +L LS  P  +L ++LP   E  A  +G
Sbjct: 352 PEKDHCYLQLSHLPAEILKERLPGISETAAIFAG 385


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 25  SLPVWLWVCWPRKTHAIRTSTKDA 96
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 47  CAGRGRLMLSERRPRMQTDFKSAALQRVL-RPIQGQPRCSERTEGISLTVFETFLPLSPV 223
           C  + ++ +    P    ++ S AL+R   R    Q R       IS + F T LP  P 
Sbjct: 46  CTTKDQMFVYGSTPAGGAEWCSEALERSRPRAAFKQQRRRHVPRWISDS-FRTCLP-KPS 103

Query: 224 GLLLQQLPDEREGFANSSGNY 286
           G+L +Q  +E EG +   G Y
Sbjct: 104 GILKEQTVNEEEGNSRHRGKY 124


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 501 KQRLLHDAEITQYIEEEFVSQQADTIRSLAGQTRTSS 611
           +++L  + E+ Q  EEE   QQA   + +A  TR +S
Sbjct: 47  QRKLQRERELRQKYEEEQRRQQAMEAKRIAASTRQTS 83


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 499 KNSASSTMPRSLNTSRRNS*VSKPIRFVASRVKLG 603
           +N +S+  P   N       VSKPI F+A  ++LG
Sbjct: 97  ENKSSNQNPSKANNLFDKLGVSKPITFIACILQLG 131


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 599 SLTREATNRIGLLTHEFLLDVLSDLGIVEEALFLVTSLW 483
           S++ E TN      + F+L   ++LG+ + ALF ++ ++
Sbjct: 138 SVSLENTNVCKASLYRFMLMCKNELGLTDAALFSISEIY 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,497
Number of Sequences: 5004
Number of extensions: 46442
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)