Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40378
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b prot...    29   2.7  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   6.2  

>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 59  GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 154
           GRLML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


>AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2b protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +1

Query: 319 IKHVTKRGGKMDFSSHTTLKGDKGSNY------TVEVGH---EIGALAKALDTQKQLAER 471
           ++H+    G ++ +S  TLK +   NY      + E+ H   EI  L  +L  QKQ+ E 
Sbjct: 36  LRHLRSEMGALNHASQETLKNNVFRNYQQFIDASKEISHLEREIYQLTHSLIEQKQVIEN 95

Query: 472 IFFIHREVTKNSASSTMPRSLNTSRRN 552
           +  +  +  K+S  +    S  TS  N
Sbjct: 96  LIMMTGD-DKSSIHTVSSHSTTTSTTN 121


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = +1

Query: 319 IKHVTKRGGKMDFSSHTTLKGDKGSNY------TVEVGH---EIGALAKALDTQKQLAER 471
           ++H+    G ++ +S  TLK +   NY      + E+ H   EI  L  +L  QKQ+ E 
Sbjct: 36  LRHLRSEMGALNHASQETLKNNVFRNYQQFIDASKEISHLEREIYQLTHSLIEQKQVIEN 95

Query: 472 IFFIHREVTKNSASSTMPRSLNTSRRN 552
           +  +  +  K+S  +    S  TS  N
Sbjct: 96  LIMMTGD-DKSSIHTVSSHSTTTSTTN 121


>AF040653-11|AAB95030.1|  332|Caenorhabditis elegans F-box b protein
           protein 46 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -3

Query: 548 LLDVLSDLGIVEEALFLVTSLWMKKIL 468
           L DVL ++GI+E+ALF V S+  KK +
Sbjct: 17  LKDVLLNMGIMEQALFSVLSVRTKKFV 43


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 346 KMDFSSHTTL--KGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSASST 519
           K+  SS +TL  +G      T     E  +   A   +K L+  +FF   +VT  S  ++
Sbjct: 600 KIPTSSFSTLPMEGTSTKEQTTLSTEETSSATTATIFEK-LSTTLFFEETQVTSTSDFTS 658

Query: 520 MPRSLNTSR 546
            PRS+ T+R
Sbjct: 659 SPRSIETTR 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,472,777
Number of Sequences: 27780
Number of extensions: 267249
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)