Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40370
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 28 0.80
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.4
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c... 26 3.2
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c... 26 4.3
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 26 4.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 5.7
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 25 9.9
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 9.9
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 25 9.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 0.80
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 204 VTLICCSCSIIKLLFSSSMCVLSTSSINSLTCIVITLVALHV 79
+ LI C S + LF S L+ SS+ SLT + +L LH+
Sbjct: 269 IELITCKFSKLNSLFLSKCIGLTDSSLLSLTKLSQSLTTLHL 310
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.4
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = -2
Query: 285 HLATVV*NSYSIDFDSLKFIFSKSIG*VTLICCSCSIIKLLFSSSMCVLSTSSI 124
HL T N+ + FD+ + IFS S G L S S+ K+ SS LS+SSI
Sbjct: 3739 HLPT---NTLASTFDNSQSIFSSSSGVPGLSTKSSSLGKIGSSSISLTLSSSSI 3789
>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 322 KDSQINLTPILTKPWRLYPQQKFTLTITCRPKFLGKTREHIKILFKGFQ 468
+DS+I+L L+ YP +K TL K + H+ L K FQ
Sbjct: 186 EDSEISLMEGLSSIENGYPDEKETLAALDNVKLSDENAAHLGYLVKYFQ 234
>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 278
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 265 LNNSGQMHYINKWIVLNKKKDSQINLTPILTKPWRLYPQQKFTLT 399
LN + +HY NK V+N ++N + I + + YPQ F ++
Sbjct: 162 LNGTDMIHYYNKTYVIN-YSGLKLNSSAINKRSY-FYPQDSFLVS 204
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 83 WRATKVITIQVSELIEDV--DNTHIDEENNSLIIEQEQ 190
W+ +VI+++ + LI D+ DN I+E+ + +E+ +
Sbjct: 61 WQPMEVISLEPTHLINDIDDDNEIIEEKKETEKVEESE 98
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 186 SCSIIK-LLFSSSMCVLSTSSINSLTCIVITLVALHVHNP*LLSI 55
+CS I+ LL + + +S SS + ++IT ++ ++ N LLSI
Sbjct: 415 TCSQIEELLLQAELANISASSFSLQLMVIITAISDNLTNDDLLSI 459
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 87 LHVHNP*LLSIASNITLFP 31
LHV + LL++A N+ LFP
Sbjct: 114 LHVEDVKLLNVAKNLQLFP 132
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 277 GQMHYINKWIVLNKKKDSQINLTPILTKPWR 369
G+ H NKWI +KD + + I WR
Sbjct: 303 GKCHQCNKWIRCQGRKDVSVKIPEIFW--WR 331
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 122 LIEDVDNTHIDEENNSLIIEQEQQISVTHPIDFENI 229
+I+ V+ + EN+++IIE + TH +D I
Sbjct: 110 VIQCVEENDFEFENSTIIIEDIDILQSTHALDSTKI 145
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.6 bits (51), Expect = 9.9
Identities = 24/92 (26%), Positives = 43/92 (46%)
Frame = -2
Query: 315 IENNPLINVMHLATVV*NSYSIDFDSLKFIFSKSIG*VTLICCSCSIIKLLFSSSMCVLS 136
I ++P+ +V+ ++ + S S DF S S I ++ S+ +L SS+ S
Sbjct: 530 IISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSS 589
Query: 135 TSSINSLTCIVITLVALHVHNP*LLSIASNIT 40
TS S + T + +P SI+S+I+
Sbjct: 590 TSLSISSSSTSSTFSSASTSSP--SSISSSIS 619
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,594
Number of Sequences: 5004
Number of extensions: 43857
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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