Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40349
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 182 6e-47
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 105 8e-24
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 98 1e-21
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 77 2e-15
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 70 3e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 69 5e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 68 1e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 67 3e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 67 3e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 66 5e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 65 8e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 60 4e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 58 2e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 56 4e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 56 5e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 56 6e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 2e-08
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 52 6e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 52 8e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 51 2e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 7e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 0.001
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.003
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.003
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 36 0.007
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.16
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.64
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 4.5
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 25 7.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 182 bits (442), Expect = 6e-47
Identities = 87/148 (58%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 433
F K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + VK +G
Sbjct: 82 FQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLG 141
Query: 434 YKEPTPIQAQGWPIAMSGKNLVGV-PTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVL 610
++ PTPIQ Q WP+AMSG+++VG+ TGSGKTL+Y LPAIVHIN QP + DGPI LVL
Sbjct: 142 FEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVL 201
Query: 611 APTRELAQQIQQVAADFGHTSYVRNTCV 694
APTRELA QIQQ FG +S +RNTCV
Sbjct: 202 APTRELAVQIQQECTKFGKSSRIRNTCV 229
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 105 bits (251), Expect = 8e-24
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRHKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 430
F K+FY + SP EV+E R + + + G++ P+ + + + ++
Sbjct: 377 FKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSL 436
Query: 431 GYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRRDGPIALV 607
GY++PT IQAQ P SG++++GV TGSGKT+A++LP HI +Q P++ +GPIA++
Sbjct: 437 GYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAII 496
Query: 608 LAPTRELAQQIQQVAADFGHTSYVRNTC 691
+ PTRELA QI + F +R C
Sbjct: 497 MTPTRELAVQIFRECKPFLKLLNIRACC 524
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 97.9 bits (233), Expect = 1e-21
Identities = 47/111 (42%), Positives = 74/111 (66%), Gaps = 4/111 (3%)
Frame = +2
Query: 323 RHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 502
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 503 V-PTGSGKTLAYILPAIVHINNQPPIRRRD---GPIALVLAPTRELAQQIQ 643
+ TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 77.4 bits (182), Expect = 2e-15
Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Frame = +2
Query: 314 EEYRHKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 484
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 485 GKNLVGV-PTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQ 637
G+++VG+ TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSD--NKSVPRVLVVSPTRELAIQ 251
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 70.1 bits (164), Expect = 3e-13
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +2
Query: 350 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKT 526
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 527 LAYILPAIVHINNQPPI-RRRDGPIALVLAPTRELAQQIQQV 649
AY++P + + Q I + G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 69.3 bits (162), Expect = 5e-13
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV-PTGSGKTLAYILPAIVH 556
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+ TGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 557 I-NNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 694
+ NN P A+VLAPTRELA QI + G + VR+ +
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVI 148
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 68.1 bits (159), Expect = 1e-12
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 14/133 (10%)
Frame = +2
Query: 338 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTG 514
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ TG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 515 SGKTLAYILPAIVHINNQPPIR-------------RRDGPIALVLAPTRELAQQIQQVAA 655
SGKT ++ P + ++ P R+ P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 656 DFGHTSYVRNTCV 694
F + S+VR V
Sbjct: 277 KFCYRSWVRPCAV 289
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 66.9 bits (156), Expect = 3e-12
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL-VGVPTGSGKTLAYILPAIVH 556
F+ N +++ V G+K+ TP+QA P+ + K+L V TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 557 INNQPPIRRRDGPIALVLAPTRELAQQIQQVAAD 658
+ + G AL++APTRELA QI V +
Sbjct: 63 VTRRD--TDETGLGALIVAPTRELATQIFNVTKE 94
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 66.9 bits (156), Expect = 3e-12
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVH 556
F+ + + + G+K PTPIQ + P+ + G+++VG+ TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 557 INNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 694
+ + AL+L+P RELA Q +V DF + +R+ +
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAI 173
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 66.1 bits (154), Expect = 5e-12
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Frame = +2
Query: 308 EVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 487
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 488 KNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAAD 658
++++G TGSGKTLA+++P I + + R+G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI-EMLYALKFKPRNGTGVIIISPTRELALQIFGVAKE 183
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 65.3 bits (152), Expect = 8e-12
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVH 556
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 557 INNQPPIRRRDGPIALVLAPTRELAQQIQQVA 652
+ +P ++ L+L PTRELA Q VA
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 59.7 bits (138), Expect = 4e-10
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
FE+ + G+ G++ P+PIQ + PIA+SG++++ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 557 INNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFG 664
++ ++ L+L PTRELA Q QV G
Sbjct: 106 VDT-----KKSKIQTLILVPTRELALQTSQVCKTLG 136
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 57.6 bits (133), Expect = 2e-09
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Frame = +2
Query: 371 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVP-TGSGKTLAYIL 541
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 542 PAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 682
+ ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 56.4 bits (130), Expect = 4e-09
Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Frame = +2
Query: 275 PHPTVLKRSPYEVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 451
P P++ ++ +++ K + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGIT-KGKAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 452 IQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTREL 628
IQ P S ++L+ PTGSGKT+AY+ P + + P G A+++APTREL
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
Query: 629 AQQIQQVA 652
+QI + A
Sbjct: 128 CEQIYRQA 135
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 56.0 bits (129), Expect = 5e-09
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = +2
Query: 314 EEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 493
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 494 LVGVP-TGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFG 664
++G TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRK-KWTSLDGLGALVISPTRELAIQTFETLVKIG 135
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 55.6 bits (128), Expect = 6e-09
Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +2
Query: 314 EEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 493
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 494 LVG-VPTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFG-H 667
++ +G+GKT + + + I+ + RD AL+L+PTRELA QIQ V G H
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSID----LSVRDTQ-ALILSPTRELAVQIQNVVLALGDH 115
Query: 668 TSYVRNTCV 694
+ + C+
Sbjct: 116 MNVQCHACI 124
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.0 bits (124), Expect = 2e-08
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
F + ++ +K + EPT IQ + G+N +G TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 557 INNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFG 664
+ P G AL+L PTRELA QI + A G
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 52.4 bits (120), Expect = 6e-08
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Frame = +2
Query: 431 GYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRRDGPI--A 601
G+ +P PIQ+ P A G +++G TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 602 LVLAPTRELAQQIQQ 646
LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 52.0 bits (119), Expect = 8e-08
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +2
Query: 428 MGYKEPTPIQAQGWPIAMSGKN---LVGVPTGSGKTLAYILPAIVHINNQPPI--RRRDG 592
M PT IQ+ P ++ + + TGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 593 PIALVLAPTRELAQQIQQVA 652
A+++APTREL QQI VA
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 50.8 bits (116), Expect = 2e-07
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = +2
Query: 371 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKNLVGVPTGSGKTLAYILPA 547
I F++ N + +G+ G++ P+ IQ + PI L +G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 548 IVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFGHTSYVR-NTCV 694
+ I+ +++ AL+LAPTRELAQQIQ+V G V + C+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACI 122
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 45.6 bits (103), Expect = 7e-06
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Frame = +2
Query: 347 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN--LVGVPTGSG 520
S ++ P + E A+ + + G+++ TP+Q + + +V TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 521 KTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 682
KTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 485 GKNLVGVPTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQI 640
G V TGSGKTL+Y++P + ++++ R R +V+ PTREL Q+
Sbjct: 174 GDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR----CVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +2
Query: 491 NLVGV-PTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQI 640
NL+ V PTG GK+L++++PA++ Q P + + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMN-MVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +2
Query: 491 NLVGV-PTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQI 640
NL+ V PTG GK+L++++PA++ Q P + + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMN-MVTLVLVPMMSLRQDM 1257
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.5 bits (78), Expect = 0.007
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +2
Query: 413 QGVKTMGYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIVHINNQPPIRRRD 589
+ + G++ P+ +Q P ++ G + L +G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 590 GPIA-LVLAPTRELAQQIQQVAADF 661
G ++ LVL TRELA QI+ A F
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARF 142
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/26 (50%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +2
Query: 479 MSGKNL-VGVPTGSGKTLAYILPAIV 553
+SGK++ + +PTG GK+L Y LPA++
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI 557
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.1 bits (62), Expect = 0.64
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 497 VGVPTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFGH 667
VG PTGSGKT+A L ++N P + + +AP + L +++ D+GH
Sbjct: 1155 VGAPTGSGKTMAAELATWRALHNYPKSK------VVYIAPMKAL---VKERVKDWGH 1202
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 428 MGYKEPTPIQAQGWPIAM-SGKN-LVGVPTGSGKTLAYILPAIVHINN 565
+ Y+ IQ+ +PIA + +N L+ PTG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 442 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFMSIL 317
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 4.5
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +2
Query: 338 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPTGS 517
V V VE PI Y GV +GY + P G P+ ++GK VPT
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKR---VPT-V 308
Query: 518 GKTLAYILPAIVHINNQPPIRRRD 589
GK +L + + + P ++R D
Sbjct: 309 GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 302 PYEVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 433
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 419 VKTMGYKEPTPIQAQGW-PIAMSGKNLVGVPTGSGKTLAYILPAIVHI 559
++ GY +P P+QA G+ P+ + L TG + ++P + +
Sbjct: 1057 IQPTGYMQPIPVQATGYQPLMVQPTGLQPHMTGVMPQVTGVMPQMTGV 1104
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 431 PLSLHLVAHNQENL--LLQSIE 372
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,681
Number of Sequences: 5004
Number of extensions: 63113
Number of successful extensions: 239
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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