Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40349
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 2e-31
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 105 3e-23
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 104 6e-23
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 98 7e-21
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 4e-15
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 6e-15
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 69 4e-12
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 65 4e-11
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 58 9e-09
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 58 9e-09
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 55 6e-08
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 53 3e-07
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 53 3e-07
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 52 4e-07
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 50 2e-06
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 50 2e-06
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 49 3e-06
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 48 5e-06
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 45 5e-05
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 44 9e-05
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 38 0.010
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 35 0.054
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 34 0.13
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 32 0.38
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 29 2.7
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08) 29 4.7
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 28 6.2
SB_52396| Best HMM Match : DEAD (HMM E-Value=0.0023) 28 8.3
SB_10588| Best HMM Match : Sec63 (HMM E-Value=0) 28 8.3
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 28 8.3
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 132 bits (320), Expect = 2e-31
Identities = 62/138 (44%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 433
FNKNFY+ HP + K+S E+++ R K + VSG P F F + + ++ +
Sbjct: 477 FNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDEQMMASIRKLE 536
Query: 434 YKEPTPIQAQGWPIAMSGKNLVGV-PTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVL 610
Y +PT IQ Q PIA+SG++++G+ TGSGKT A++ PA+VHI +QP ++ DGPI L+
Sbjct: 537 YTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLIC 596
Query: 611 APTRELAQQIQQVAADFG 664
APTREL QQI A FG
Sbjct: 597 APTRELCQQIYTEARRFG 614
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 105 bits (252), Expect = 3e-23
Identities = 59/133 (44%), Positives = 77/133 (57%)
Frame = +2
Query: 296 RSPYEVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 475
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ---- 112
Query: 476 AMSGKNLVGVPTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAA 655
+ILP IVHIN+QP ++ DGPI LVL PTRELAQQ+Q+VA
Sbjct: 113 -------------------FILPGIVHINHQPLLQPGDGPIVLVLCPTRELAQQVQEVAY 153
Query: 656 DFGHTSYVRNTCV 694
G +R+TC+
Sbjct: 154 SVGKHCKLRSTCI 166
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 104 bits (250), Expect = 6e-23
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Frame = +2
Query: 320 YRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 499
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 500 GV-PTGSGKTLAYILPAIVHINNQPPIRRRD----GPIALVLAPTRELAQQIQQVAADFG 664
GV TGSGKT A+ +P +V I P I R + GP AL+LAPTRELAQQI++ FG
Sbjct: 143 GVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIEEEILKFG 202
Query: 665 HTSYVRNTCV 694
+R V
Sbjct: 203 RPLGIRTVSV 212
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 97.9 bits (233), Expect = 7e-21
Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 433
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 434 YKEPTPIQAQGWPIAMSGKNLVGV-PTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVL 610
++ PTPIQ Q MSG++++G+ TGSGKTLAY LP + + + P D P+AL+L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
Query: 611 APTRELAQQI 640
PTREL QQ+
Sbjct: 152 TPTRELMQQV 161
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 78.6 bits (185), Expect = 4e-15
Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Frame = +2
Query: 344 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSG 520
VSG I F E F + + + GY+ PTP+Q PI M+G++L+ TGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 521 KTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFG-HT 670
KT AY+LP + + Q P+AL +APTRELA+QI A F HT
Sbjct: 529 KTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKFSDHT 579
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 78.2 bits (184), Expect = 6e-15
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Frame = +2
Query: 335 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPT 511
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++ T
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 757
Query: 512 GSGKTLAYILPAIVHINN----QPPIRRRDGPIALVLAPTRELAQQIQQVAADFGHTSYV 679
GSGKT A++LP + + N P A+ +APTRELA QI A F H + +
Sbjct: 758 GSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIYLEARKFAHGTML 817
Query: 680 R 682
R
Sbjct: 818 R 818
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 68.9 bits (161), Expect = 4e-12
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPA 547
++ F + G+ G+ PT IQ QG P+A+SG++++G TGSGKTLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 548 IVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFGH 667
I + Q DG ALV++PTRELA Q +V G+
Sbjct: 109 IETLWRQ-KWTSMDGLGALVISPTRELAYQTFEVLVKIGN 147
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +2
Query: 269 YDPHPTVLKRSPYEVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 448
Y HPT+ + +V++ R K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 449 PIQAQGWPIAMSGKN-LVGVPTGSGKTL 529
PIQ Q P+ +SG++ +V TGSGK L
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +2
Query: 413 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRRD 589
QG+K MG+ T IQ + + G++L+G TGSGKTLA+++P +V + + + R+
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVP-VVELLYKLQFKTRN 643
Query: 590 GPIALVLAPTRELAQQIQQVAAD 658
G ++++PTREL+ Q VA D
Sbjct: 644 GTGVIIISPTRELSLQTYGVARD 666
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +2
Query: 242 FTPTFNKNFYDPHPTVLKRSPYEVEEYRHKHEVTVSGVE 358
F+ T KN D LKRSP V HK TV G+E
Sbjct: 756 FSATQTKNVEDLAKLSLKRSPLYVGVDDHKETSTVEGLE 794
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
FE+ + G+ G+ +P+PIQ + P+A++G++++ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 557 INNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFG 664
+ ++ ALVL PTRELA Q Q+ + G
Sbjct: 109 TDT-----TKNCIQALVLVPTRELALQTSQICIELG 139
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 57.6 bits (133), Expect = 9e-09
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +2
Query: 380 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVH 556
FE+ + G+ G+ +P+PIQ + P+A++G++++ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 557 INNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFG 664
+ ++ ALVL PTRELA Q Q+ + G
Sbjct: 109 TDT-----TKNCIQALVLVPTRELALQTSQICIELG 139
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +2
Query: 254 FNKNFYDPHPTVLKRSPYEVEEYRHKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 430
F K+FY P + K +P E +E+R E + V G P++ + + + +K
Sbjct: 64 FRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKILDVLKKN 123
Query: 431 GYKEPTPIQAQGWPIAMSGKNLVGVPTGSGKTLA 532
Y++PTPIQAQ P+ MSG++++ + + LA
Sbjct: 124 SYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELA 157
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +2
Query: 521 KTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV 694
K +Y P + P I IA+V+ PTRELA QI + F + +R CV
Sbjct: 121 KKNSYEKPTPIQAQAIPVIMSGRDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCV 178
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 54.8 bits (126), Expect = 6e-08
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 413 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRRD 589
+ V +G+ PTPIQA P+A+ GK++ TG+GKT A++LP + + +P +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP--TQSP 80
Query: 590 GPIALVLAPTRELAQQ 637
LV+ PTRELA Q
Sbjct: 81 AIRVLVITPTRELAIQ 96
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 428 MGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRRDGPIAL 604
MG K+PT IQ P + G++ +G TGSGKT A+ LP + + + P G A+
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP-----YGIFAV 79
Query: 605 VLAPTRELAQQI 640
VL PTRELA QI
Sbjct: 80 VLTPTRELAFQI 91
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 52.8 bits (121), Expect = 3e-07
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Frame = +2
Query: 329 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--N 493
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 494 LVG-VPTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFG-H 667
++ +G+GKT A++L + ++ P P + L+PT ELA+Q +VA G H
Sbjct: 145 MIAQSQSGTGKTAAFVLTMLSRVDATKPY-----PQVICLSPTYELARQTGKVAEAMGKH 199
Query: 668 TSYVR 682
+++
Sbjct: 200 CPHIK 204
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 308 EVEEYRHKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 475
++ +RH+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 476 AMSGKNLVG 502
G G
Sbjct: 197 MAHGPKKSG 205
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +2
Query: 335 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVP-T 511
EV + G P + F +Y + +G PT +Q WP + G+++ GV
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 512 GSGKTLAYILPAIVHINNQPPIRR---RDGPIALVLAPTRELAQQIQQVAAD 658
GSGK LAY+LP I I + +GP+ L+L + ++ V D
Sbjct: 234 GSGKRLAYLLPIIHQITESSVYQELPLANGPLVLILCTNWQNTARVYGVCED 285
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 335 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPT 511
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++ T
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 180
Query: 512 GSGKT 526
GSGKT
Sbjct: 181 GSGKT 185
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +2
Query: 449 PIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRRD-GPIALVLAPTR 622
PIQA + G++++G TG+GKTL++ LP + + + ++R P LV+APTR
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTR 157
Query: 623 ELAQQI 640
ELA+Q+
Sbjct: 158 ELAKQV 163
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +2
Query: 371 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPA 547
I FE+ + + + V GYK+PTP+Q PI ++L+ TGSGKT A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 548 IVHINNQPP 574
+ I + P
Sbjct: 934 LSRIYMEGP 942
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +2
Query: 422 KTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRRDGPI 598
+T G+++P+ IQ + + G++++ +G+GKT + + + I+ Q +R P
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQ--LRE---PQ 67
Query: 599 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 694
ALVL+PTRELA QIQ+V G + S + C+
Sbjct: 68 ALVLSPTRELANQIQKVVLALGDYMSVQCHACI 100
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 16/98 (16%)
Frame = +2
Query: 398 PDYVQQGVKTMGYKEPTPIQAQGWPIAMS-GKNLVGVP-TGSGKTLAYILPAIVHINNQP 571
PD + + + G+ +PTPIQ+ P A+ ++++G TGSGKTLA+ +P I HI
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYK 197
Query: 572 PIRRRDGP--------------IALVLAPTRELAQQIQ 643
+ P +AL++APTRELA Q++
Sbjct: 198 KRKAEQSPSDKESDLESQGYPLLALIMAPTRELALQVK 235
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 48.4 bits (110), Expect = 5e-06
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +2
Query: 398 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL-VGVPTGSGKTLAYILPAIVHINNQPP 574
P V++ +K MG +P PIQ + P S K+L + TG+GK+L ++LP++ Q P
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV-----QDP 222
Query: 575 IRRRDGPIALVLAPTRELA-QQIQQVAADFGHTSYV 679
R G +++ PTRELA Q + +V+ G S V
Sbjct: 223 GR---GYGTIIVVPTRELASQMLYEVSRLLGDKSIV 255
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 470 PIAMSGKNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQ 646
P+ M GK++V + TGSGKT A+++P + + G AL+L+PTRELA Q Q+
Sbjct: 313 PLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTA---KVGIRALILSPTRELALQTQK 369
Query: 647 VAADFGHTSYVRNTCV 694
+ G + ++++ +
Sbjct: 370 FIKELGRFTGLKSSVI 385
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 45.2 bits (102), Expect = 5e-05
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Frame = +2
Query: 401 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV-GVPTGSGKTLAYILPAIVHINNQPP- 574
D V + + + +PT IQ P + +++ TGSGKTLAY+ P + +
Sbjct: 387 DDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLVHRLREDEER 446
Query: 575 ---IRRRDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 685
+ R P A ++ P RELA QI + A H + R+
Sbjct: 447 HGILARLKRPRACIVVPARELATQILKTAKSLCHHARFRS 486
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 413 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG-VPTGSGKTLAYILPAIVHINNQPPIRRRD 589
+G+ G+++P+PIQ + P+ G +L+ +G+GKT + + A+ ++ I +
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENV-----ITESN 80
Query: 590 GPIALVLAPTRELAQQIQQVAADFG 664
++L PTRE+A Q++ V G
Sbjct: 81 CIQIIILTPTREIAVQVKDVICAIG 105
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +2
Query: 479 MSGKNLVG-VPTGSGKTLAYILPAIVHIN-NQPPIRRRDGPIALVLAPTRELAQQIQQVA 652
+S ++++ +G+GKT + + + I+ N D ALVLAPTRELAQQIQ+V
Sbjct: 120 LSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVV 179
Query: 653 ADFGHTSYVR-NTCV 694
G +V+ + C+
Sbjct: 180 LALGDYMHVKCHACI 194
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 488 KNLVGVP-TGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTRELAQQIQQVAADFG 664
K+++G+ TGSGKT A+ LP + + + P AL+L PTRELA QI + G
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP-----QRLFALILTPTRELAFQISEQCEALG 56
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +2
Query: 431 GYKEPTPIQAQGWPIAMSGKN-LVGVPTGSGKTLAYILPAIV 553
GY + P+Q Q ++ K+ L+ +PTG+GKT+ Y +PA++
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPALL 177
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 593 PIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 694
P ALVL+PTRELA QIQ+V G + S + C+
Sbjct: 4 PQALVLSPTRELANQIQKVVLALGDYMSVQCHACI 38
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 386 EANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG-KNLVGVPTGSGKTLAYILPAIVHIN 562
E P V + + +G+ Q Q +SG +LV + TG+GK+L Y LPA ++
Sbjct: 506 ETETPPEVYKALGQLGFSSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMYHK 565
Query: 563 NQP 571
P
Sbjct: 566 RSP 568
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 497 VGVPTGSGKTLAYILPAIV 553
V +PTGSGK+L Y LPA+V
Sbjct: 39 VSMPTGSGKSLCYQLPAVV 57
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 356 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 469
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 302 PYEVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 433
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 186 HQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGY 76
H L YC RC T CCLLQ++++ ++G+
Sbjct: 484 HLQQPSLAAYC-RCITILTTAIACCLLQVYHNTYNGH 519
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +2
Query: 281 PTVLKRSPYEVEEYRHKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA 460
P ++KR P V+E H+H VT P ++ N Y T +P A
Sbjct: 234 PAMVKREPCMVDEEGHEHRVTPPSFPTAPPRAGYDPQNPYSYGAYCAYTQA--QPQGFNA 291
Query: 461 QGWP 472
Q +P
Sbjct: 292 QAYP 295
>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
Length = 816
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +2
Query: 245 TPTFNKNFY-DPHPTVLKRSPYEVEEYRHK-HEVTVSGVEVHNPIQYFEEANFPDYVQQG 418
TP N Y P P V + S Y +Y H S ++ + ++ P Y+QQ
Sbjct: 330 TPGMNGAAYGQPPPLVNQISQYNGSQYNQSLHYSLPSTFQISPVTPSLQPSSVPFYLQQD 389
Query: 419 VKTMGYKEPTPIQAQGWPIAMSGKNL 496
++ +G + Q P+A SG+ +
Sbjct: 390 LEALGRISQPRVSPQSRPLA-SGQQV 414
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 479 MSGKNLVGV-PTGSGKTLAYILPAIV 553
MSG + + + PTG GK+L + LPA+V
Sbjct: 102 MSGVDCILIMPTGGGKSLCFQLPAVV 127
>SB_52396| Best HMM Match : DEAD (HMM E-Value=0.0023)
Length = 191
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 497 VGVPTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAP 616
+ +PTG GK+L Y +V IRR+ G I +V++P
Sbjct: 41 INLPTGYGKSLIYQAMPLVF----DDIRRKSGHIVVVVSP 76
>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 1047
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 449 PIQAQGWPIAMSGKN--LVGVPTGSGKTLAYILPAIVHINNQPPIRRRDGPIALVLAPTR 622
P+Q Q + + + L+G PTGSGKT+ L AI + ++ P G A+ +AP +
Sbjct: 169 PVQTQVFHTVYNSDHNVLLGAPTGSGKTIIAEL-AIFRLFDKYP-----GAKAVYIAPLK 222
Query: 623 ELAQQ 637
L ++
Sbjct: 223 ALVRE 227
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/82 (26%), Positives = 33/82 (40%)
Frame = +2
Query: 395 FPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVPTGSGKTLAYILPAIVHINNQPP 574
FP + K +P I S +G PTGSGKT+ A++ Q P
Sbjct: 1957 FPSSIPFRHKVQSLLKPISISVFSTLYDSSENVFIGAPTGSGKTICAEF-AVLRFLQQSP 2015
Query: 575 IRRRDGPIALVLAPTRELAQQI 640
R + + P + LA+Q+
Sbjct: 2016 EGR-----CVYVTPIQALAEQV 2032
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,203,338
Number of Sequences: 59808
Number of extensions: 481054
Number of successful extensions: 1315
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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