Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40348
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    30   1.3  
At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 famil...    29   4.1  
At4g27595.1 68417.m03964 protein transport protein-related low s...    28   5.4  
At4g11200.1 68417.m01813 hypothetical protein contains weak hit ...    28   7.1  
At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 famil...    27   9.4  
At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 famil...    27   9.4  

>At3g19670.1 68416.m02492 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
           GI:3341980; contains Pfam profiles PF01846: FF domain,
           PF00397: WW domain
          Length = 960

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 587 DAQCERLSNMTKNELIQEYLLLEAKFENLVKRTERSKMKRME 712
           D +C RL  + + E+ QEYL    + E   K+ ++ ++K++E
Sbjct: 586 DERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVE 627


>At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 319

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +3

Query: 396 PFNNNQFLMEIHKPEPENAFNILQT 470
           P+NN ++ ++I + +P NA +I++T
Sbjct: 151 PYNNKKYFIDIVETKPANAISIIET 175


>At4g27595.1 68417.m03964 protein transport protein-related low
            similarity to SP|P25386 Intracellular protein transport
            protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 587  DAQCERLSNMTKNELIQEYLLLEAKFEN-LVKRTERSKMKRMEE 715
            + + E LSN+ K+ L++E  L +  FEN  +K  E   +K  EE
Sbjct: 871  EKKIEELSNLNKSLLVKESELQDVVFENEKLKSKEALSLKTTEE 914


>At4g11200.1 68417.m01813 hypothetical protein contains weak hit to
           Pfam profile PF03108: MuDR family transposase
          Length = 462

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 518 NYFYALPEDEEEYLTKEFSSVYEDAQCERL 607
           NY   +P ++EEY T +  S  E+ Q ERL
Sbjct: 305 NYEEQIPYEDEEYPTTDDESGDEEVQAERL 334


>At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 315

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +3

Query: 396 PFNNNQFLMEIHKPEPENAFNILQT 470
           P+NN ++ ++I + +P N  +I++T
Sbjct: 151 PYNNKKYFIDIVEAKPSNGISIIET 175


>At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 311

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +3

Query: 396 PFNNNQFLMEIHKPEPENAFNILQT 470
           P+NN ++ ++I + +P N  +I++T
Sbjct: 151 PYNNKKYFIDIVEAKPSNGISIIET 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,378,675
Number of Sequences: 28952
Number of extensions: 252174
Number of successful extensions: 576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)