Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40347
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73...    33   0.13 
03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047...    30   1.2  
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    29   3.7  
02_02_0046 + 6340556-6340589,6343022-6343131,6343208-6343307,634...    29   3.7  
04_04_1398 - 33245268-33245876,33247516-33247608,33247639-332478...    28   6.5  

>11_01_0101 -
           738305-738556,738723-738977,739306-739554,739649-739843,
           739953-740060,740184-740405,740806-741390,741495-741863,
           742423-742529,742755-742883,743027-743084,743166-743248,
           744115-744196,744274-744350,744477-744560,744649-744718,
           744796-744884,744965-745654,746127-746439
          Length = 1338

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 281 KYQISWTEEPA-KARSGVHQINILDEEGWASLRRARRADPAASVAPLLAIQLSHPGSYS 454
           KY+I +    A K +SG+  IN L +  + S+RR RR    A +AP L   ++ P  ++
Sbjct: 590 KYRIRFCLVLAEKEKSGIPNINWLRDRLFRSIRRRRRRGALAPLAPTLTTAIAMPSCFT 648


>03_06_0120 +
           31804301-31804412,31804525-31804631,31804714-31804756,
           31806069-31806187
          Length = 126

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 458 PWVNSEILATFISILVAIRHFVTRARY*LK 547
           PW N+ I+ T   I++ +RHF   A Y +K
Sbjct: 86  PWENAVIITTSFVIIIFLRHFCALALYGMK 115


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +2

Query: 245 WKIIT---AARIGENKYQISWTEEPAKARSGVHQINILDEEGWA 367
           W ++T   A   GE K+   W EEP K     H +    E  WA
Sbjct: 243 WCVVTTGAATTAGEGKWSRWWPEEPGKEIQSSHLLEYRGELLWA 286


>02_02_0046 +
           6340556-6340589,6343022-6343131,6343208-6343307,
           6343392-6343477,6343846-6344124,6346337-6346435,
           6346803-6346826
          Length = 243

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -1

Query: 502 QD*DECCQYLGVHPWPGVAARMTKLYGE*WSNRGGRIGTSSTTQRSPAFFI*NVYLVHSG 323
           +D  +CC + G H   G    +T       S    + G +  TQR   FF  N   +  G
Sbjct: 174 RDDHDCCSHSGAHALQGSECELTTWSATKQSIFEDKPGKNCCTQRGAEFFYTNSQ-IGQG 232

Query: 322 ASLRW 308
           A   W
Sbjct: 233 AEAEW 237


>04_04_1398 -
           33245268-33245876,33247516-33247608,33247639-33247827,
           33248146-33248496
          Length = 413

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 248 KIITAARIGENKYQISWTEEPAK--ARSGVHQINILDEEGWASLRRARRADPAASVAPLL 421
           KI+T  ++   K++ +W E  A   AR  V Q  +  ++ W S    R+   A   APL 
Sbjct: 169 KIVTKKQV---KWRWTWLESKATGFARDPVTQAILAPDKWWESQESERKGAKAFKDAPLK 225

Query: 422 AIQLSH 439
            I   H
Sbjct: 226 CIDEHH 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,184,166
Number of Sequences: 37544
Number of extensions: 274681
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)