Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40337
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984...    29   3.6  
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272...    28   6.3  
06_03_1013 - 26896690-26896818,26897051-26897089,26897178-268973...    28   8.3  

>08_02_0146 -
           13195691-13196658,13197613-13197809,13198002-13198479,
           13199660-13199782,13200139-13200466
          Length = 697

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 80  SHPTNNLIINLPATGAGSPTHINISLSIKYMYFIHGYQVSSQSDAWFSSYNGTSVKT 250
           S PT  L++++P T A   +  N S   K M F+ G+QVSS+        +G   K+
Sbjct: 56  SMPT--LLLSIPGTNALRHSSRNSSRWAKPMPFVEGFQVSSRQGMSLFRKHGNDCKS 110


>08_02_0154 -
           13324384-13325351,13326306-13326502,13326695-13327274,
           13328324-13328446,13328803-13329130
          Length = 731

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 80  SHPTNNLIINLPATGAGSPTHINISLSIKYMYFIHGYQVSSQ 205
           S PT  L++++P T A   +  N S   K M F+ G+QVSS+
Sbjct: 56  SMPT--LLLSIPGTNALRHSSRNSSRWAKPMPFVEGFQVSSR 95


>06_03_1013 -
           26896690-26896818,26897051-26897089,26897178-26897300,
           26897822-26897902,26898048-26898138,26898325-26898396,
           26898474-26898574,26899211-26899309,26899942-26900286
          Length = 359

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 12  LILLRILAVPVRFAGHLKLTLLFLTPQTI 98
           ++L  ILA+P+  + + K+ L+FLTP T+
Sbjct: 76  VVLRDILAMPMPVSKNPKIALMFLTPGTL 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,918,849
Number of Sequences: 37544
Number of extensions: 327852
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)