Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40333
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39648-6|AAM15602.1| 557|Caenorhabditis elegans Abnormal dauer ... 36 0.025
U39648-5|AAK39293.1| 572|Caenorhabditis elegans Abnormal dauer ... 36 0.025
AF407572-1|AAL65132.1| 557|Caenorhabditis elegans DAF-9 isoform... 36 0.025
L23648-8|AAA28030.1| 503|Caenorhabditis elegans Hypothetical pr... 31 1.2
AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family pr... 30 2.2
Z83233-8|CAB05759.2| 378|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical... 29 2.9
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 5.0
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 5.0
>U39648-6|AAM15602.1| 557|Caenorhabditis elegans Abnormal dauer
formation protein9, isoform b protein.
Length = 557
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 560 PPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPP 676
PP AV +SPFV E+ E+ +YG + HL+ P
Sbjct: 97 PPMAVFGNSPFVNILTPEQTFLEYREIYGPIFTLHLSQP 135
>U39648-5|AAK39293.1| 572|Caenorhabditis elegans Abnormal dauer
formation protein9, isoform a protein.
Length = 572
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 560 PPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPP 676
PP AV +SPFV E+ E+ +YG + HL+ P
Sbjct: 112 PPMAVFGNSPFVNILTPEQTFLEYREIYGPIFTLHLSQP 150
>AF407572-1|AAL65132.1| 557|Caenorhabditis elegans DAF-9 isoform A
protein.
Length = 557
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 560 PPAAVLASSPFVTSQPTEELLREFETVYGAVELTHLTPP 676
PP AV +SPFV E+ E+ +YG + HL+ P
Sbjct: 97 PPMAVFGNSPFVNILTPEQTFLEYREIYGPIFTLHLSQP 135
>L23648-8|AAA28030.1| 503|Caenorhabditis elegans Hypothetical
protein F44B9.2 protein.
Length = 503
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 530 SEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETV---YGAVELTHLTPPQSPP 688
S VP P PA ++ ++P ++ + +L+ ET+ G E+T PP +PP
Sbjct: 18 SSVP--TSPTTPATIIEAAPVLSDAFDKPILKSVETISVSNGPPEVTISAPPPTPP 71
>AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family
protein 18, isoform a protein.
Length = 193
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 429 NDLLQQLDSQCKQENIFSNWLEEKVDLLRSSK 524
N +Q++D+ C +NI + K+D++R S+
Sbjct: 76 NHWMQEVDTYCTNDNIIKMMVANKIDMVRKSR 107
>Z83233-8|CAB05759.2| 378|Caenorhabditis elegans Hypothetical
protein K06B4.8 protein.
Length = 378
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 141 KTPTSLDINPSGLLFAFVELNHYNNEC 221
KTP LD +L+ F+ELN N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258
>AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical
protein Y48C3A.14 protein.
Length = 855
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3
Query: 789 NLPRFLRPFQGAGGASAVHCAC*A*LRSN*VAGPGGLCGGVKCVNS 652
N P F + QGAG + VH +C + SN V G CGGV +++
Sbjct: 686 NNPPFEKMPQGAGCDTCVHPSCQYSISSNGVCGCLQDCGGVMLLDT 731
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Frame = +2
Query: 506 PPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVE-LTHLTPPQS 682
PP+ E+ P R P PP++ + S+P + YG E H PP
Sbjct: 560 PPTRVESHGLAPARPPPPPPSS--GTRGIAPSRPLPQAPN-----YGTPENRPHAVPPPP 612
Query: 683 PPGPATQLLLSYAQQAQCTALAPPAP 760
PP P ++ A PP P
Sbjct: 613 PPPPPQSFGMAPISSAAPPPPPPPPP 638
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Frame = +2
Query: 506 PPSIFENISEVPERVDPQPPAAVLASSPFVTSQPTEELLREFETVYGAVE-LTHLTPPQS 682
PP+ E+ P R P PP++ + S+P + YG E H PP
Sbjct: 386 PPTRVESHGLAPARPPPPPPSS--GTRGIAPSRPLPQAPN-----YGTPENRPHAVPPPP 438
Query: 683 PPGPATQLLLSYAQQAQCTALAPPAP 760
PP P ++ A PP P
Sbjct: 439 PPPPPQSFGMAPISSAAPPPPPPPPP 464
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,370,204
Number of Sequences: 27780
Number of extensions: 357028
Number of successful extensions: 1279
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -