Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40120
(674 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 153 5e-36
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 148 1e-34
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 146 4e-34
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 139 7e-32
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 129 7e-29
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 116 7e-25
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 116 7e-25
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 115 9e-25
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 115 1e-24
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 106 4e-22
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 95 1e-18
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 88 2e-16
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 76 9e-13
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 73 5e-12
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 73 8e-12
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 69 1e-10
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 68 2e-10
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 68 2e-10
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 60 4e-08
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 60 4e-08
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 58 3e-07
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 56 6e-07
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 56 1e-06
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 55 1e-06
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 55 1e-06
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 55 1e-06
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 55 2e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 53 6e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 48 2e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 47 5e-04
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 44 0.003
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 42 0.010
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 42 0.010
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 40 0.042
UniRef50_UPI0000E0F5DE Cluster: glycosyl transferase, group 1 fa... 33 8.4
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 33 8.4
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 8.4
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 153 bits (370), Expect = 5e-36
Identities = 70/86 (81%), Positives = 78/86 (90%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QR
Sbjct: 9 LKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
L+KVDGK TDPTYPAG+MDV+++E+
Sbjct: 69 LVKVDGKVRTDPTYPAGYMDVITLEK 94
Score = 134 bits (323), Expect = 2e-30
Identities = 70/130 (53%), Positives = 83/130 (63%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTH G TIRY DPL
Sbjct: 94 KTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPL 153
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV*SLDAVTXCVWAPSCSARDIPXPSTFVAHSKD 614
I NDS+Q+DIA+ KI D+IKF+SG + + R+ S + H KD
Sbjct: 154 IHANDSVQVDIASGKITDYIKFDSGNLC-MITGGRNLGRVGTVVNRERHPGSFDIVHIKD 212
Query: 615 SNGDHTFRXR 644
S G H F R
Sbjct: 213 SQG-HVFATR 221
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 148 bits (358), Expect = 1e-34
Identities = 68/86 (79%), Positives = 76/86 (88%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR
Sbjct: 9 LKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
IK+DGK TD TYPAGFMDV+SI++
Sbjct: 69 FIKIDGKVRTDITYPAGFMDVISIDK 94
Score = 137 bits (331), Expect = 3e-31
Identities = 70/126 (55%), Positives = 88/126 (69%), Gaps = 2/126 (1%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTH TIRY DPL
Sbjct: 94 KTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPL 153
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGT-CV*SLDAVTXCVWAPSCSARDIPXPSTF-VAHS 608
IKVND+IQ+D+ T KI DFIKF++G C+ + A + + R P +F V H
Sbjct: 154 IKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRER---HPGSFDVVHV 210
Query: 609 KDSNGD 626
KD+NG+
Sbjct: 211 KDANGN 216
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 146 bits (354), Expect = 4e-34
Identities = 67/86 (77%), Positives = 75/86 (87%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR
Sbjct: 9 LKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
IK+DGK TD TYP GFMDV+SI++
Sbjct: 69 FIKIDGKVRTDITYPTGFMDVISIDK 94
Score = 86.6 bits (205), Expect(2) = 3e-25
Identities = 47/100 (47%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Frame = +3
Query: 333 KYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPLIKVNDSIQLDIATTKIMDFIKFE-SG 509
+YKLCKVK++ G K +P+LVTH TIRY DPLIKVND++++D+ T KI DFIKF+ S
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 510 TCV*SLDAVTXCVWAPSCSARDIPXPSTF-VAHSKDSNGD 626
C+ + A + + R P +F V H KDS G+
Sbjct: 212 MCMVTGGANLGRIGVITNRER---HPGSFDVVHVKDSTGN 248
Score = 51.6 bits (118), Expect(2) = 3e-25
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAK 335
KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 94 KTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 139 bits (336), Expect = 7e-32
Identities = 64/86 (74%), Positives = 73/86 (84%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
I+VDGK TD TYPAGFMDVVSI +
Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSIPK 94
Score = 117 bits (281), Expect = 3e-25
Identities = 53/88 (60%), Positives = 66/88 (75%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+ G TIRY DPL
Sbjct: 94 KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
IK ND+I+LD+ KI++FIKF+ G V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 37.9 bits (84), Expect = 0.22
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 503 VWNLCMITGCRNLXRVGTIVFRERHSGSFD 592
V N+ M+TG RN RVG I RE+H GSF+
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFE 206
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 129 bits (311), Expect = 7e-29
Identities = 59/91 (64%), Positives = 67/91 (73%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R
Sbjct: 9 LKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIERLMNCF 273
IK+DGK TD YP GFMDV+SI R F
Sbjct: 69 TIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 96.7 bits (230), Expect = 5e-19
Identities = 50/130 (38%), Positives = 77/130 (59%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
+T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTH G TIRY P
Sbjct: 94 RTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPE 153
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV*SLDAVTXCVWAPSCSARDIPXPSTFVAHSKD 614
++ ND+I+L++ T KI+DF+KF+ G + R++ S + H KD
Sbjct: 154 LQANDTIKLNLETGKIVDFVKFDIGNTAMMIGG-NGMGRVGVIVKREVHPGSFEIVHIKD 212
Query: 615 SNGDHTFRXR 644
+ G +TF R
Sbjct: 213 AKG-NTFTTR 221
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 116 bits (278), Expect = 7e-25
Identities = 59/87 (67%), Positives = 67/87 (77%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q
Sbjct: 20 LKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQW 78
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIERL 261
IKVDGK TD P MDV+SI+++
Sbjct: 79 FIKVDGKIRTDNNLPYWIMDVISIDKM 105
Score = 95.1 bits (226), Expect = 1e-18
Identities = 47/97 (48%), Positives = 63/97 (64%)
Frame = +3
Query: 219 LSCWIYGCSLN*KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 398
L WI K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 399 HXGCTIRYXDPLIKVNDSIQLDIATTKIMDFIKFESG 509
H T+R+ D LIKVND+IQ+D+ T KI +KF++G
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTG 187
Score = 37.5 bits (83), Expect = 0.29
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +2
Query: 509 NLCMITGCRNLXRVGTIVFRERHSGSFD 592
NLC++TG N R+G I RERH SFD
Sbjct: 188 NLCLVTGGGNWGRIGVITNRERHPVSFD 215
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 116 bits (278), Expect = 7e-25
Identities = 53/68 (77%), Positives = 58/68 (85%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 9 LKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQH 68
Query: 181 LIKVDGKD 204
IK+DGKD
Sbjct: 69 FIKMDGKD 76
Score = 113 bits (272), Expect = 4e-24
Identities = 57/114 (50%), Positives = 74/114 (64%)
Frame = +3
Query: 285 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPLIKVNDSIQLD 464
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTH TIRY DPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 465 IATTKIMDFIKFESGTCV*SLDAVTXCVWAPSCSARDIPXPSTFVAHSKDSNGD 626
+ T KI DF KF++G + T + R+ S V H KD+NG+
Sbjct: 136 LETGKITDFFKFDTGNLC-MVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGN 188
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 115 bits (277), Expect = 9e-25
Identities = 54/91 (59%), Positives = 65/91 (71%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+R
Sbjct: 23 LKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRR 82
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIERLMNCF 273
L+KVDGK T+ YP G MDV+ + + F
Sbjct: 83 LVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 94.3 bits (224), Expect = 2e-18
Identities = 40/85 (47%), Positives = 60/85 (70%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTH G TI Y DP
Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167
Query: 435 IKVNDSIQLDIATTKIMDFIKFESG 509
++V+D+++ +I T ++ IKF+ G
Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVG 192
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 115 bits (276), Expect = 1e-24
Identities = 54/86 (62%), Positives = 62/86 (72%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q
Sbjct: 6 LKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQG 65
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
L+ VD D YPAGFMDVV I +
Sbjct: 66 LVHVDNHPRRDGKYPAGFMDVVEIPK 91
Score = 76.2 bits (179), Expect = 7e-13
Identities = 38/88 (43%), Positives = 50/88 (56%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTH G IRY DP
Sbjct: 91 KTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPDPH 150
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
+ D+I ++ K +D IK G V
Sbjct: 151 TSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 106 bits (255), Expect = 4e-22
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +1
Query: 4 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 183
KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+
Sbjct: 10 KRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNE 69
Query: 184 IKVDGKDWTDPTYPAGFMDVVSIE 255
I VDGK D +PAG MDV+SI+
Sbjct: 70 IYVDGKVRADKNFPAGVMDVISIK 93
Score = 102 bits (244), Expect = 9e-21
Identities = 48/88 (54%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = +3
Query: 258 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPLI 437
T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTH G TIR+ + LI
Sbjct: 95 TKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLI 154
Query: 438 KVNDSIQLDIATTKIMDFIKFESGT-CV 518
K NDSI LD+ K++DFIKF G+ CV
Sbjct: 155 KSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 95.5 bits (227), Expect = 1e-18
Identities = 41/85 (48%), Positives = 58/85 (68%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTH TIR+ +P
Sbjct: 206 KTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPE 265
Query: 435 IKVNDSIQLDIATTKIMDFIKFESG 509
IK+ D+++ D+ KI +F ESG
Sbjct: 266 IKIGDTLKYDLVNNKIENFAHLESG 290
Score = 74.9 bits (176), Expect = 2e-12
Identities = 39/74 (52%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = +1
Query: 58 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKDWTDPTYPAG 231
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGK D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 232 FMDVVSIERLMNCF 273
MDVV IE+ F
Sbjct: 198 LMDVVRIEKTDQSF 211
Score = 37.1 bits (82), Expect = 0.39
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 509 NLCMITGCRNLXRVGTIVFRERHSGSFDIC 598
N+C I N+ RVG I E+H GSFDIC
Sbjct: 291 NVCYIQQGNNIGRVGIIQHIEKHQGSFDIC 320
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 87.8 bits (208), Expect = 2e-16
Identities = 41/86 (47%), Positives = 57/86 (66%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ ++
Sbjct: 9 LKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEK 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
IKV+G+ T+ +P G DVVSIE+
Sbjct: 69 NIKVNGRVRTNSHFPVGLFDVVSIEK 94
Score = 68.9 bits (161), Expect = 1e-10
Identities = 31/80 (38%), Positives = 54/80 (67%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ DP
Sbjct: 94 KTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPA 152
Query: 435 IKVNDSIQLDIATTKIMDFI 494
I + +I++ T+K++++I
Sbjct: 153 IDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 75.8 bits (178), Expect = 9e-13
Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +1
Query: 1 LKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 177
+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+ +
Sbjct: 12 VKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITR 71
Query: 178 RLIKVDGKDWTDPTYPAGFMDVVSIER 258
I VDG +P +P G MDVV I R
Sbjct: 72 GEIYVDGVVRKEPKFPVGIMDVVEIPR 98
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 73.3 bits (172), Expect = 5e-12
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 LKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 177
L+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ +
Sbjct: 4 LRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISR 63
Query: 178 RLIKVDGKDWTDPTYPAGFMDVVSI 252
+KVDG D +P G MDV+ I
Sbjct: 64 GYVKVDGVVRRDYKFPVGLMDVIEI 88
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 72.5 bits (170), Expect = 8e-12
Identities = 36/87 (41%), Positives = 51/87 (58%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 10 LKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTG 69
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIERL 261
I +DG + +PAG MDV+SI +
Sbjct: 70 KILIDGLKRKEYKHPAGLMDVLSIPEM 96
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 68.9 bits (161), Expect = 1e-10
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
L+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 4 LRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKG 63
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSI 252
+KVDGK D YP G MDV+ +
Sbjct: 64 YVKVDGKVRRDYKYPVGLMDVIEL 87
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 67.7 bits (158), Expect = 2e-10
Identities = 34/84 (40%), Positives = 49/84 (58%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
L+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+ R
Sbjct: 12 LRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASR 71
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSI 252
+I+VDG+ TD +P G MDV+ I
Sbjct: 72 VIEVDGRVVTDYKFPVGLMDVLHI 95
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 67.7 bits (158), Expect = 2e-10
Identities = 32/84 (38%), Positives = 48/84 (57%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++ +
Sbjct: 10 LKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEG 69
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSI 252
+VDG D +P GFMDV+ +
Sbjct: 70 HFRVDGVVRKDYKFPVGFMDVIEV 93
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 6 LKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEG 65
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSI 252
+ VDGK D Y G D +SI
Sbjct: 66 KVLVDGKVRKDYRYTVGMFDTISI 89
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 60.5 bits (140), Expect = 4e-08
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 10 LKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSG 69
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
+ VDG+ D +P GFMD++ I +
Sbjct: 70 NVLVDGRVIKDYKFPVGFMDIIEIPK 95
Score = 44.4 bits (100), Expect = 0.003
Identities = 26/88 (29%), Positives = 43/88 (48%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KT E++R++ D KGR +++I EE KLCK+ +T + H G + +
Sbjct: 95 KTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDEND 152
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
V D I L + +I + + + G CV
Sbjct: 153 YNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 57.6 bits (133), Expect = 3e-07
Identities = 27/91 (29%), Positives = 50/91 (54%)
Frame = +1
Query: 4 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 183
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 184 IKVDGKDWTDPTYPAGFMDVVSIERLMNCFV 276
+KVDG+ D +P GFMDV+SI+ L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 56.4 bits (130), Expect = 6e-07
Identities = 27/84 (32%), Positives = 46/84 (54%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++ R
Sbjct: 6 MKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATR 65
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSI 252
+ VDG+ TD G MDV+++
Sbjct: 66 QVLVDGRIETDLGRGVGLMDVLTV 89
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 55.6 bits (128), Expect = 1e-06
Identities = 32/84 (38%), Positives = 42/84 (50%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 4 ITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDG 63
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSI 252
+ VDGK D YP G MDVV I
Sbjct: 64 KVLVDGKVRRDYKYPVGLMDVVEI 87
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 55.2 bits (127), Expect = 1e-06
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 4 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 183
KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 6 KRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGN 65
Query: 184 IKVDGKDWTDPTYPAGFMDVVSI 252
+ VDG D +P G MD+++I
Sbjct: 66 VLVDGVARKDLRFPVGLMDIITI 88
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 55.2 bits (127), Expect = 1e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Frame = +1
Query: 4 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 183
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 184 IKVDGKDWTDPTYPAGFMDVVSIERL 261
+ ++G TD D++S ++
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKI 89
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 55.2 bits (127), Expect = 1e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +1
Query: 4 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 183
KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 5 KRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGK 64
Query: 184 IKVDGKDWTDPTYPAGFMDVVSI 252
+ VDG D +P G DV+++
Sbjct: 65 VLVDGISRKDLRFPVGLFDVITL 87
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 54.8 bits (126), Expect = 2e-06
Identities = 31/87 (35%), Positives = 47/87 (54%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+ QR
Sbjct: 5 LKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILHQR 63
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIERL 261
+ V+G+ D G D+VSI +L
Sbjct: 64 DVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 33.5 bits (73), Expect = 4.8
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
K + +R+ DVKG I E AK +LCK++ T L G + D
Sbjct: 89 KLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV-LADNT 147
Query: 435 IKVNDSIQLDIAT 473
K DS+ + + T
Sbjct: 148 YKAKDSVVVTLGT 160
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 53.2 bits (122), Expect = 6e-06
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 LKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 177
L+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++
Sbjct: 9 LRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNN 68
Query: 178 RLIKVDGKDWTDPTYPAGFMDVVSIERL 261
+ VDG+ D +P G DV++I +
Sbjct: 69 GKVLVDGRPIKDYKFPVGLFDVLAIPEI 96
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +1
Query: 4 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 183
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 184 IKVDGKDWTDPTYPAGFMDVVSI 252
+KVDGK + + GFMDV+ I
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI 88
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +1
Query: 4 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 183
KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 6 KRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDN 64
Query: 184 IKVDGKDWTDPTYPAGFMDVVS 249
+ ++GK +D P G D+++
Sbjct: 65 VLINGKAISDEERPVGMFDILA 86
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +1
Query: 4 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 183
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 184 IKVDGKDWTDPTYPAGFMDVVSI 252
+ VDGK + GFMD +++
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTV 88
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 42.3 bits (95), Expect = 0.010
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 10 LKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSG 69
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSI 252
++VDG T + G MDVV +
Sbjct: 70 NVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 42.3 bits (95), Expect = 0.010
Identities = 21/84 (25%), Positives = 41/84 (48%)
Frame = +3
Query: 261 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPLIK 440
N+ +R++ G+ T++ I E K+CKV ++ ++T ++ IK
Sbjct: 96 NKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIK 155
Query: 441 VNDSIQLDIATTKIMDFIKFESGT 512
V DS+ + +I+ +KFE G+
Sbjct: 156 VEDSLLIKTINDEIVYALKFEVGS 179
Score = 38.7 bits (86), Expect = 0.13
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +1
Query: 4 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 183
KR+++ K G++ + S+GPH + + L+ ++ A E K+VK
Sbjct: 10 KRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGF 69
Query: 184 IKVDGKDWTDPTYPAGFMDVVS 249
+ V+GK +P MD +S
Sbjct: 70 LYVNGKKCLSHKFPISLMDTIS 91
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 40.3 bits (90), Expect = 0.042
Identities = 27/86 (31%), Positives = 44/86 (51%)
Frame = -1
Query: 512 SSRLKLDEVHNLRSCDV*LDGIVDFDKWVXVADGAAXMRYQVRNILRSGRXTLDFTQLVL 333
S+ ++LD + +L DV +G+ D + V +GAA ++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 332 SLLRGDTVDCESALNIID*TKQFISL 255
D V ES+L ++D + FI+L
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIAL 187
>UniRef50_UPI0000E0F5DE Cluster: glycosyl transferase, group 1
family protein; n=1; alpha proteobacterium HTCC2255|Rep:
glycosyl transferase, group 1 family protein - alpha
proteobacterium HTCC2255
Length = 551
Score = 32.7 bits (71), Expect = 8.4
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +3
Query: 258 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPLI 437
TN + Y G +HR +EA++ LC + + L +R D LI
Sbjct: 83 TNSTLYMPYPGIGDMAVHRAKIDEARFSLCGITHTTASHSVMETLSNLLTDPVRPWDALI 142
Query: 438 KVNDSIQ--LDIATTKIMDFIKFESG 509
+ S++ +++ + MD+++++ G
Sbjct: 143 CTSSSVRQSVEVILDEKMDYLRWKLG 168
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 32.7 bits (71), Expect = 8.4
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = +1
Query: 70 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKDWTDPTYPAGFMDVVS 249
+T P +L + + L + ++ K L E L I KQ+ +KV+ K DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 250 IE 255
IE
Sbjct: 158 IE 159
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 8.4
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +1
Query: 31 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 192
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 679,190,513
Number of Sequences: 1657284
Number of extensions: 13279865
Number of successful extensions: 35034
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 33735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35020
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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