Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40120
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   135   5e-33
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   134   1e-32
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   134   1e-32
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    28   1.1  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   2.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   4.3  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.6  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   10.0 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   10.0 

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  135 bits (327), Expect = 5e-33
 Identities = 60/86 (69%), Positives = 70/86 (81%)
 Frame = +1

Query: 1   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
           LKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QR
Sbjct: 9   LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQR 68

Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
           LIKVDGK  TD T+P GFMDV+S+E+
Sbjct: 69  LIKVDGKVRTDSTFPTGFMDVISVEK 94



 Score =  132 bits (320), Expect = 3e-32
 Identities = 61/88 (69%), Positives = 71/88 (80%)
 Frame = +3

Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
           KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTH G TIRY DPL
Sbjct: 94  KTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPL 153

Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
           IKVND+I+L++ T KI  FIKF++   V
Sbjct: 154 IKVNDTIKLNLETNKIESFIKFDTSAQV 181



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +2

Query: 518 MITGCRNLXRVGTIVFRERHSGSFDICGTFKGLQR 622
           M+TG RN+ RVGTIV RE H GSF+I      L R
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDR 216


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  134 bits (324), Expect = 1e-32
 Identities = 59/86 (68%), Positives = 70/86 (81%)
 Frame = +1

Query: 1   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
           LKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QR
Sbjct: 9   LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQR 68

Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
           LIKVDGK  TD T+P GFMDV+S+++
Sbjct: 69  LIKVDGKVRTDSTFPTGFMDVISVDK 94



 Score =  132 bits (320), Expect = 3e-32
 Identities = 61/88 (69%), Positives = 71/88 (80%)
 Frame = +3

Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
           KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTH G TIRY DPL
Sbjct: 94  KTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPL 153

Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
           IKVND+I+L++ T KI  FIKF++   V
Sbjct: 154 IKVNDTIKLNLETNKIESFIKFDTSAQV 181



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +2

Query: 518 MITGCRNLXRVGTIVFRERHSGSFDICGTFKGLQR 622
           M+TG RN+ RVGTIV RE H GSF+I      L R
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDR 216


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  134 bits (323), Expect = 1e-32
 Identities = 59/86 (68%), Positives = 70/86 (81%)
 Frame = +1

Query: 1   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
           LKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QR
Sbjct: 9   LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQR 68

Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
           LI+VDGK  TD T+P GFMDV+S+E+
Sbjct: 69  LIQVDGKVRTDSTFPTGFMDVISVEK 94



 Score =  132 bits (320), Expect = 3e-32
 Identities = 61/88 (69%), Positives = 71/88 (80%)
 Frame = +3

Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
           KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTH G TIRY DPL
Sbjct: 94  KTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPL 153

Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
           IKVND+I+L++ T KI  FIKF++   V
Sbjct: 154 IKVNDTIKLNLETNKIESFIKFDTSAQV 181



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +2

Query: 518 MITGCRNLXRVGTIVFRERHSGSFDICGTFKGLQR 622
           M+TG RN+ RVGTIV RE H GSF+I      L R
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDR 216


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 543 CVWAPSCSARDIPXPST-FVAHSKDSNGDH 629
           CV  PSCS +DIP P+    A S    G+H
Sbjct: 322 CVGRPSCSRQDIPIPAVPNEAFSFSGYGEH 351


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 106 LVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKDWTDP 216
           L+ F+  RL++ LT  E+LKI+      V    + DP
Sbjct: 145 LIDFMNTRLQHRLTEGEILKILADVCDAVAAMHYLDP 181


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 437 QSQRFHPVRHRNYED 481
           ++++ HPVRH  YED
Sbjct: 5   ENEKIHPVRHSKYED 19


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 231 SSRISRVSPIFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 76
           SS+   + P  P++   +E  F  NFQ      S L  IP++   G ++A+++GT
Sbjct: 27  SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 332 SLLRGDTVDCESALNIID*TKQ 267
           S  RGDT D  +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 673 PIYDTRXFNLRXRKVWSPLESFE 605
           PI+ +  FN+R R+ W+ L  F+
Sbjct: 454 PIFSSIDFNVRNREYWNQLMVFQ 476


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 20/86 (23%), Positives = 33/86 (38%)
 Frame = -2

Query: 310 WIVNLPLTS*IRRNSSLVFQLRLHP*IQQDK*GQSNLSHQPL*GVVSQFSGLRFRSKHTS 131
           W+V          + SL+      P ++  K G    + +   G +   + L  ++ HTS
Sbjct: 237 WLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTS 296

Query: 130 DDSSGKSPGASTRATCGDRLTVSVHT 53
                 SP AST ++      V  HT
Sbjct: 297 ASQVSLSPMASTASSSVTNSPVDTHT 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,465
Number of Sequences: 5004
Number of extensions: 55826
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)