Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40117
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    29   0.79 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.4  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    27   2.4  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   3.2  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    27   4.2  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    27   4.2  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   7.4  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 219 ENTNPHHQNIVREFISNSENVSVLEQSQTYRYV 317
           E +NP+    +R+F+ N+ N S L QS+  RY+
Sbjct: 269 ETSNPY---FLRDFLKNNANTSTLGQSEQLRYL 298


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +3

Query: 615 KHFVACIVNIV--FYLTLFLNKFIIFFSTSTPDLLFHHFYNEKQ 740
           ++FV+C++ I+  ++LTL+L   +I   TS+   L H   N+K+
Sbjct: 454 EYFVSCLLFIISAYFLTLWLMSLVIAVVTSSFIDLQHSGKNQKE 497


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 201 PELQQIENTNPHHQNIVREFISNSEN 278
           P+L  + N NP  QN+ R F++N+ N
Sbjct: 279 PDLSSLAN-NPQLQNLARNFMNNNNN 303


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 642 IVFYLTLFLNKFIIFFSTSTPDLLFHHFYNEKQSVL 749
           +V+++ +FL +   FF  S    L+H    EK+  L
Sbjct: 85  VVYWIRVFLKRIYTFFVHSARVFLYHFLNEEKEFTL 120


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 651 YLTLFLNKFIIFFSTSTPDLLFHHFYNEKQSVLQLLRVLWIE 776
           +++L  N    F +  TPD   HH   ++  + QLL   W+E
Sbjct: 420 FISLDKNLSSKFVNQITPDNRLHHKKQKRSPISQLLFSRWLE 461


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 101 RNKRINRISTCSIREQGY*KNIGTKFSC 184
           ++ + NR+  C+    GY  N G KF+C
Sbjct: 136 KSMQTNRLPGCTAESWGYHGNSGEKFNC 163


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 508 CQEIGLICVYSGQSTYSLNHHIRDID 585
           C+EI L CV  G+   S++  +RD++
Sbjct: 565 CEEIELACVEIGKERKSISASLRDLN 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,666
Number of Sequences: 5004
Number of extensions: 68626
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)