Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40106
         (814 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q402D6 Cluster: Putative uncharacterized protein an0147...    65   2e-09
UniRef50_Q64RA9 Cluster: Putative uncharacterized protein; n=3; ...    34   4.9  

>UniRef50_Q402D6 Cluster: Putative uncharacterized protein an0147;
           n=1; Bombyx mori|Rep: Putative uncharacterized protein
           an0147 - Bombyx mori (Silk moth)
          Length = 249

 Score = 64.9 bits (151), Expect = 2e-09
 Identities = 29/34 (85%), Positives = 30/34 (88%)
 Frame = +1

Query: 16  LPRGFSPYAQSNWDQIGTNVANKIFSKVPYDQIF 117
           L R   PYAQSNWD+IGTNVANKIFSKVPYDQIF
Sbjct: 212 LYRELLPYAQSNWDKIGTNVANKIFSKVPYDQIF 245


>UniRef50_Q64RA9 Cluster: Putative uncharacterized protein; n=3;
           Bacteroides|Rep: Putative uncharacterized protein -
           Bacteroides fragilis
          Length = 524

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -1

Query: 802 ILFIFSKLLIITIILCAIVHTTLGSFS*KPDTTKISDDIIRLTIDSSGLRLAIHEFPGYF 623
           +LF+    +IIT+++   V +   +F    DT  +SD +IR T  ++G R  +   P  +
Sbjct: 6   LLFMMRIRIIITLLIALFVESRQEAFGQTVDTLSLSDKVIRTTSFATGFRGEVWRNPALY 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 762,966,260
Number of Sequences: 1657284
Number of extensions: 15000483
Number of successful extensions: 27190
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27186
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)