Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40098
         (858 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YRR3 Cluster: Putative uncharacterized protein; n=1; ...    35   3.0  
UniRef50_A2EQ53 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  
UniRef50_A7QLU7 Cluster: Chromosome chr18 scaffold_122, whole ge...    33   9.2  
UniRef50_A0DW64 Cluster: Chromosome undetermined scaffold_66, wh...    33   9.2  

>UniRef50_Q4YRR3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 46

 Score = 34.7 bits (76), Expect = 3.0
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -3

Query: 652 LCLFINFSAYFKYLGHLFSLSNMYYVSHISFYLVHTLIY*FF 527
           +C++I +   F Y G    L  +Y++  I FY+++T++Y FF
Sbjct: 5   MCIYI-YCVLFLYFGEHVKLLELYFIK-ILFYIIYTIVYYFF 44


>UniRef50_A2EQ53 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 456

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 652 LCLFINFSAYFKYLGHLFSLSNMYYVSHISFYLV 551
           +CLFINF  +  Y  H FS+SN     H+  YLV
Sbjct: 47  ICLFINFH-FIIYHMHKFSVSNRIAAYHVQIYLV 79


>UniRef50_A7QLU7 Cluster: Chromosome chr18 scaffold_122, whole
           genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_122, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 365

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -2

Query: 650 MFIYKF*CLFQILRSSFLTK*YVLCISHLFL-FSSHINLLVFFWFWHV--CVLASV 492
           +FI+   C+ +I       K  +LCI  +FL F  HIN  VF++F+ +  C+   +
Sbjct: 304 VFIFYVFCVLKIYFFENNKKNIILCIFIIFLLFKKHINFCVFYFFYLIIFCIFTKI 359


>UniRef50_A0DW64 Cluster: Chromosome undetermined scaffold_66, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_66,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 288

 Score = 33.1 bits (72), Expect = 9.2
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +1

Query: 490 LTLANTQTCQNQKKTNKLMCE--LNRKRCEIHNTYYLVRKDD 609
           LTLA  Q  Q +KK +KL+ +  LNR++  IHN   +++ ++
Sbjct: 14  LTLAELQKIQEEKKLDKLLDQEHLNRQKKSIHNEKNIIKNEE 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,548,301
Number of Sequences: 1657284
Number of extensions: 13852777
Number of successful extensions: 28772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28724
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)