Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40079
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    30   0.34 
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    27   1.8  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    27   3.2  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   3.2  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   4.2  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    26   4.2  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    26   5.6  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   7.4  

>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 417 IKLERKRQRNRVAASKCRRRK 479
           +K  R  +RNR+AASKCR++K
Sbjct: 268 MKRRRFLERNRIAASKCRQKK 288


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 291 YADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRV 452
           + D   P   Y TP  K     VP  +S+PPLS      Q   +   +R  +R+
Sbjct: 171 FEDASSPQSSYHTP-TKRRKNAVPRKSSSPPLSSTKHAPQSTERRPVRRSESRL 223


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 420 KLERKRQRNRVAASKCRRRKLERI 491
           K  R  +RNR+AASK R++K E I
Sbjct: 12  KRRRILERNRIAASKFRQKKKEWI 35


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +3

Query: 291 YADLDRPLERYPTP-----IVKDEPQTVPSAASTPPLSPIDMDTQEKIKL 425
           Y D  R ++R  TP     I K+E  TVP     PP    D +T  K+ +
Sbjct: 252 YKDSKREMKRSNTPWSNASIKKNEVPTVPIRYKPPPWRDSDFETVPKLPI 301


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 438 QRNRVAASKCRRRKLERIS 494
           +RNR AA KCR+RK + +S
Sbjct: 480 ERNRQAALKCRQRKKQWLS 498


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 327 TPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVAASKCRRRKL 482
           +P+        PSA + P  S I++   E +  + K+++      K  R+K+
Sbjct: 72  SPVSSQTTYATPSAYAVPQESEIELHESEMVPQKPKKKKRSRRNRKASRKKI 123


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
 Frame = +2

Query: 263 GSDAARTSSICRFGQAARAIPHSHREGRAPDGAERGQH----AAAITHRHGHSGKDQTGE 430
           G D +++     +G   +A P     G A D +  G H    +    HR G  G D T  
Sbjct: 171 GEDYSQSYPTDTYGSRQKATPSDTVGGGAYDYSSSGSHTHGGSHGTEHRGGSYGNDNTAN 230

Query: 431 K 433
           K
Sbjct: 231 K 231


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 402 DTQEKIKLERKRQRNRVAASKCRRRKLERI 491
           +T+EK+K   K+ R+ +AA+  R     RI
Sbjct: 127 ETEEKVKQYEKQNRDSIAANSARAAAEARI 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,125
Number of Sequences: 5004
Number of extensions: 49599
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)