Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30770
(471 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 126 8e-30
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 126 8e-30
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 126 8e-30
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 124 2e-29
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 119 1e-27
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 77 6e-15
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 77 8e-15
At1g18390.1 68414.m02297 protein kinase family protein contains ... 29 1.6
At2g01890.2 68415.m00123 purple acid phosphatase, putative conta... 27 8.5
At2g01890.1 68415.m00122 purple acid phosphatase, putative conta... 27 8.5
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 126 bits (304), Expect = 8e-30
Identities = 58/72 (80%), Positives = 66/72 (91%)
Frame = +2
Query: 38 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 217
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 218 IVVNLTGRLNKC 253
IVV L GRLNKC
Sbjct: 61 IVVELNGRLNKC 72
Score = 97.5 bits (232), Expect = 4e-21
Identities = 44/57 (77%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 423
VISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 126 bits (304), Expect = 8e-30
Identities = 58/72 (80%), Positives = 66/72 (91%)
Frame = +2
Query: 38 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 217
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 218 IVVNLTGRLNKC 253
IVV L GRLNKC
Sbjct: 61 IVVELNGRLNKC 72
Score = 97.5 bits (232), Expect = 4e-21
Identities = 44/57 (77%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 423
VISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 126 bits (304), Expect = 8e-30
Identities = 58/72 (80%), Positives = 66/72 (91%)
Frame = +2
Query: 38 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 217
MVR++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 218 IVVNLTGRLNKC 253
IVV L GRLNKC
Sbjct: 61 IVVELNGRLNKC 72
Score = 97.5 bits (232), Expect = 4e-21
Identities = 44/57 (77%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 423
VISPRFDV + +IE WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 124 bits (300), Expect = 2e-29
Identities = 57/72 (79%), Positives = 65/72 (90%)
Frame = +2
Query: 38 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 217
MVR++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 218 IVVNLTGRLNKC 253
IVV L GRLNKC
Sbjct: 61 IVVELNGRLNKC 72
Score = 95.9 bits (228), Expect = 1e-20
Identities = 43/57 (75%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 423
VISPRFDV + +IE WT LLPSRQFG++VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 119 bits (286), Expect = 1e-27
Identities = 55/72 (76%), Positives = 62/72 (86%)
Frame = +2
Query: 38 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 217
MVR +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 218 IVVNLTGRLNKC 253
IVV L GRLN C
Sbjct: 67 IVVELNGRLNNC 78
Score = 93.9 bits (223), Expect = 5e-20
Identities = 41/57 (71%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
Frame = +1
Query: 256 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 423
VISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK+LGFF+
Sbjct: 80 VISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +2
Query: 53 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 232
+L+DAL++I NAEKRGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 233 TGRLNKC 253
GR+N C
Sbjct: 65 QGRVNDC 71
Score = 64.1 bits (149), Expect = 5e-11
Identities = 28/52 (53%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
Frame = +1
Query: 268 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 420
R DV N+I ++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++LGFF
Sbjct: 77 RQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 76.6 bits (180), Expect = 8e-15
Identities = 33/67 (49%), Positives = 48/67 (71%)
Frame = +2
Query: 53 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 232
+L+DAL++I NAE+RGK V ++P S V+ FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 233 TGRLNKC 253
GR+N C
Sbjct: 65 QGRVNDC 71
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/53 (52%), Positives = 43/53 (81%), Gaps = 1/53 (1%)
Frame = +1
Query: 268 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 423
R DV +IE++T LP+RQ+GY+V+TT GI+DHEEA ++++GG++LGFF+
Sbjct: 77 RQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 116 IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 223
+RPC + LT + +G+ E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591
>At2g01890.2 68415.m00123 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
identical to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana];
Length = 307
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 236 GRLNKCVSFHLVLMFPSTILKDGLICSPHDSLVT*SLQQVVASWTMKKPEENTL 397
G++ K ++ ++ DG+I SP+DS S + + +++KP N L
Sbjct: 69 GKIGKDLNIDFLISTGDNFYDDGII-SPYDSQFQDSFTNIYTATSLQKPWYNVL 121
>At2g01890.1 68415.m00122 purple acid phosphatase, putative contains
Pfam profile: PF00149 calcineurin-like phosphoesterase;
identical to purple acid phosphatase (GI:20257479)
[Arabidopsis thaliana];
Length = 335
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 236 GRLNKCVSFHLVLMFPSTILKDGLICSPHDSLVT*SLQQVVASWTMKKPEENTL 397
G++ K ++ ++ DG+I SP+DS S + + +++KP N L
Sbjct: 69 GKIGKDLNIDFLISTGDNFYDDGII-SPYDSQFQDSFTNIYTATSLQKPWYNVL 121
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,873,099
Number of Sequences: 28952
Number of extensions: 170187
Number of successful extensions: 321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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