Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30769
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)                      48   6e-06
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)                    47   2e-05
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   7.1  
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  

>SB_43772| Best HMM Match : DUF243 (HMM E-Value=3)
          Length = 472

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 21/41 (51%), Positives = 29/41 (70%)
 Frame = +2

Query: 635 YLFGGKALTLQSIGRGFARRLTFEPHNSTLNENTNYFWTDS 757
           +LF G  L LQS+G+G+ +RL+FE  +   NE  NYFW+DS
Sbjct: 202 FLFEGNPLVLQSVGQGYGKRLSFESEDVLYNE--NYFWSDS 240


>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
          Length = 646

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = +2

Query: 635 YLFGGKALTLQSIGRGFARRLTFEPHNSTLNENTNYFWTDS 757
           YLF GKA+ L+ +G G+ +RLTFE  +  +  N N+FW+DS
Sbjct: 9   YLFEGKAVLLERVGAGYGKRLTFE--SEDVLHNDNFFWSDS 47


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 729  SLSVELWGSNVSLRANPRPIDCRVKALPPNKYL 631
            S+ VEL+G  V+ R   RP+  + +   PN++L
Sbjct: 1122 SMRVELYGKRVAYRRRMRPLGIQNRRRVPNRHL 1154


>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 226 NKHNDSKNNHSPNEFQEKSNMINGINGLMNDT 131
           N HN++ NN+S N    K+N  N  N   N++
Sbjct: 183 NNHNNNNNNNSNNHNNHKNNNHNNNNSNNNNS 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,729,894
Number of Sequences: 59808
Number of extensions: 426049
Number of successful extensions: 1079
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)