Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30767
(360 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 123 4e-29
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 123 4e-29
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 122 7e-29
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 122 7e-29
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 122 7e-29
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 121 2e-28
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 83 4e-17
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 30 0.53
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 30 0.53
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 30 0.53
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 29 0.70
At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co... 29 0.93
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr... 27 3.8
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 27 5.0
At4g24410.1 68417.m03500 expressed protein 26 8.7
At3g23160.1 68416.m02919 expressed protein contains Pfam domain ... 26 8.7
At1g70130.1 68414.m08070 lectin protein kinase, putative similar... 26 8.7
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 123 bits (296), Expect = 4e-29
Identities = 56/84 (66%), Positives = 65/84 (77%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
GYPNLKSV EL+YKRG+ KL+ QRI +T NSI ++ L KH IICVEDLIHEI TVG FK
Sbjct: 142 GYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFK 201
Query: 181 YASNFLWPFKLNNPTGGWRKKTIH 252
A+NFLWPF+L P GG +KK H
Sbjct: 202 EANNFLWPFQLKAPLGGLKKKRNH 225
Score = 34.7 bits (76), Expect = 0.019
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 231 LAQEDHSLVDGGDFGNREDKINDLLRRM 314
L ++ + V+GGD GNRE+ IN+L+RRM
Sbjct: 219 LKKKRNHYVEGGDAGNRENFINELVRRM 246
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 123 bits (296), Expect = 4e-29
Identities = 56/84 (66%), Positives = 65/84 (77%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
GYPNLKSV EL+YKRG+ KL+ QRI +T NSI ++ L KH IICVEDLIHEI TVG FK
Sbjct: 137 GYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFK 196
Query: 181 YASNFLWPFKLNNPTGGWRKKTIH 252
A+NFLWPF+L P GG +KK H
Sbjct: 197 EANNFLWPFQLKAPLGGLKKKRNH 220
Score = 34.7 bits (76), Expect = 0.019
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 231 LAQEDHSLVDGGDFGNREDKINDLLRRM 314
L ++ + V+GGD GNRE+ IN+L+RRM
Sbjct: 214 LKKKRNHYVEGGDAGNRENFINELVRRM 241
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 122 bits (294), Expect = 7e-29
Identities = 56/84 (66%), Positives = 64/84 (76%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
GYPNLKSV EL+YKRGF KL+ QR +T NSI ++ L KH IICVEDLIHEI TVG FK
Sbjct: 139 GYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFK 198
Query: 181 YASNFLWPFKLNNPTGGWRKKTIH 252
A+NFLWPF+L P GG +KK H
Sbjct: 199 EANNFLWPFQLKAPLGGMKKKRNH 222
Score = 33.9 bits (74), Expect = 0.033
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3
Query: 255 VDGGDFGNREDKINDLLRRM 314
V+GGD GNRE+ IN+L+RRM
Sbjct: 224 VEGGDAGNRENFINELVRRM 243
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 122 bits (294), Expect = 7e-29
Identities = 56/84 (66%), Positives = 64/84 (76%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
GYPNLKSV EL+YKRGF KL+ QR +T NSI ++ L KH IICVEDLIHEI TVG FK
Sbjct: 139 GYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFK 198
Query: 181 YASNFLWPFKLNNPTGGWRKKTIH 252
A+NFLWPF+L P GG +KK H
Sbjct: 199 EANNFLWPFQLKAPLGGMKKKRNH 222
Score = 33.9 bits (74), Expect = 0.033
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3
Query: 255 VDGGDFGNREDKINDLLRRM 314
V+GGD GNRE+ IN+L+RRM
Sbjct: 224 VEGGDAGNRENFINELVRRM 243
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 122 bits (294), Expect = 7e-29
Identities = 56/84 (66%), Positives = 64/84 (76%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
GYPNLKSV EL+YKRGF KL+ QR +T NSI ++ L KH IICVEDLIHEI TVG FK
Sbjct: 139 GYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFK 198
Query: 181 YASNFLWPFKLNNPTGGWRKKTIH 252
A+NFLWPF+L P GG +KK H
Sbjct: 199 EANNFLWPFQLKAPLGGMKKKRNH 222
Score = 33.9 bits (74), Expect = 0.033
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3
Query: 255 VDGGDFGNREDKINDLLRRM 314
V+GGD GNRE+ IN+L+RRM
Sbjct: 224 VEGGDAGNRENFINELVRRM 243
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 121 bits (291), Expect = 2e-28
Identities = 55/84 (65%), Positives = 64/84 (76%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
G+PNLKSV EL+YKRG+ KL+ QRI +T NSI E+ L KH IIC EDLIHEI TVG FK
Sbjct: 137 GFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFK 196
Query: 181 YASNFLWPFKLNNPTGGWRKKTIH 252
A+NFLWPF+L P GG +KK H
Sbjct: 197 EANNFLWPFQLKAPLGGLKKKRNH 220
Score = 35.1 bits (77), Expect = 0.014
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 231 LAQEDHSLVDGGDFGNREDKINDLLRRM 314
L ++ + V+GGD GNRE+ IN+L+RRM
Sbjct: 214 LKKKRNHYVEGGDAGNRENFINELIRRM 241
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 83.4 bits (197), Expect = 4e-17
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
GYPN KSV +L+YK+G + G +P+T N+I E+ L +H I+ +EDL++EI VG+ F+
Sbjct: 141 GYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFR 200
Query: 181 YASNFLWPFKLNNPTGG--WRKKTIH*STGET 270
FL P KLN P RKK + G+T
Sbjct: 201 EVMRFLGPLKLNKPVADVLHRKKQVFSEGGDT 232
Score = 35.9 bits (79), Expect = 0.008
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 258 DGGDFGNREDKINDLLRRM 314
+GGD GNREDKINDL+ +M
Sbjct: 228 EGGDTGNREDKINDLISKM 246
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 239 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSS 96
LR P + L + GH K ++Y+ F + + + SST L LW L S
Sbjct: 690 LRNPKIPLCTMIGHSKTVSYVKFVDSSTL--VSSSTDNTLKLWDLSMS 735
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 239 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSSM 93
LR P + L + GH K ++Y+ F + + + SST L LW L S+
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDLSMSI 694
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 29.9 bits (64), Expect = 0.53
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 239 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSSM 93
LR P + L + GH K ++Y+ F + + + SST L LW L S+
Sbjct: 648 LRNPKLPLCTMIGHHKTVSYVRFVDSSTL--VSSSTDNTLKLWDLSMSI 694
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 29.5 bits (63), Expect = 0.70
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 209 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSSMLLEVIGIRCPLSLA 51
LKGH+K + L FS + I + S +C WS+ + + + I+ P A
Sbjct: 900 LKGHQKRITGLAFSTALNI-LVSSGADAQICFWSIDTWEKRKSVAIQMPAGKA 951
>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 695
Score = 29.1 bits (62), Expect = 0.93
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 234 PTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLFINAVGS 82
P T W ++ P+E++ +LE LM +LNT + + IN GS
Sbjct: 136 PKTVW---YQDPEEVSSLLEAVDRVSKLMGLLLNTKSCLDHHESLINHAGS 183
>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 886
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 145 IHEIFTVGEKFKYASNFLWPFKLNNPTGGW 234
++ + ++ E F Y NF +K N+P GW
Sbjct: 327 VNTLLSIVEAFGYPVNFAEKWKGNDPCSGW 356
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 240 LAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLF 100
LA W+ G ++LEL N+E L+D+VL + + M ++
Sbjct: 1125 LAYNLGWLSHPGGSAIAAQLLELGKNNEILIDQVLRQELALAMPKIY 1171
>At4g24410.1 68417.m03500 expressed protein
Length = 169
Score = 25.8 bits (54), Expect = 8.7
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Frame = -2
Query: 239 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRS----STQIMLCLWSLFSSMLLEVIGI 72
+R L+NLK H L+ +N T IS +++ +TQ +C + +++ GI
Sbjct: 43 IRSAAQKLYNLKAHAADLSMINAITTKLISRIKTNITKTTQQKMCTIKSNCRLRIDIHGI 102
Query: 71 RCPLSLANPRLYTNSLTLFKLG 6
R L + L T+ L F+ G
Sbjct: 103 R----LTDELLETSQLKNFENG 120
>At3g23160.1 68416.m02919 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668);
expression supported by MPSS
Length = 522
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 213 EQSNWWLAQEDHSLVDGGDFGNREDKINDLLRRMV 317
EQ W Q+ SL DG + DK+ ++L R V
Sbjct: 190 EQKLMWQRQDVKSLRDGSLWNQTYDKVVEMLARTV 224
>At1g70130.1 68414.m08070 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 656
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 25 SELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVG 168
SE++ K GF K+ +P++S I K++ + + + + EI T+G
Sbjct: 337 SEVLGKGGFGKVFKGILPLSSIPIAVKKISHDSRQGMREFLAEIATIG 384
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,247,613
Number of Sequences: 28952
Number of extensions: 167067
Number of successful extensions: 485
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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