Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30759
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     29   2.6  
SB_19636| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_36407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 424  IWYYNDIKMDNVYWEFTKPFLC*VENNATFFFV 326
            IW+  DI M N + + TK  L   E+NA F ++
Sbjct: 942  IWFRTDITMVNFFKDHTKVVLIPGEDNALFIYI 974


>SB_19636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 456 DSQLSINKKNLFGTTMI*KWTMCIGNLLNHFYVELKI 346
           D+QL+  KKN   T  +  WT CI  +LN F V + I
Sbjct: 36  DAQLNPKKKNPAVTNTL-LWTTCINKMLNLFQVYMII 71


>SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 456 DSQLSINKKNLFGTTMI*KWTMCIGNLLNHFYVELKI 346
           D+QL+  KKN   T  +  WT CI  +LN F V + I
Sbjct: 150 DAQLNPKKKNPAVTNTL-LWTTCINKMLNLFQVYMII 185


>SB_36407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 380 FPIHIVHFYIIVVPNKFFLLID 445
           FP H++H++++   N+F+ L D
Sbjct: 198 FPTHVMHYFLVYDSNRFYHLSD 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,479,770
Number of Sequences: 59808
Number of extensions: 373756
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)