Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30755
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45) 33 0.24
SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.98
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 31 1.3
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 29 5.2
SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41) 29 5.2
SB_23074| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15) 29 5.2
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 28 9.1
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 28 9.1
>SB_6508| Best HMM Match : AMP-binding (HMM E-Value=2.8026e-45)
Length = 1038
Score = 33.1 bits (72), Expect = 0.24
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Frame = -1
Query: 530 SIESSVACPRL-RVDCLLFGTT*FC*RTQHQETPKPRRVCTASPGSSPSSVT*RKRLVCS 354
++ + +AC R+ + ++FG + E +PR + TAS G PS + K LV
Sbjct: 176 AVIAMLACARIGAIHSVVFGGFAAAELARRIEHAEPRVIVTASCGIEPSRIVTYKPLVDE 235
Query: 353 SIFLTSVEPT----YSYACCL--LCGS*DLAPHRSPPKPQPVVLVPILCTSPV 213
+I ++S +P+ Y C + D+ + + +P VP+L T P+
Sbjct: 236 AIKISSFKPSTVVLYQRDQCTGDIIPGRDITWDQVMERAEPHDCVPVLATDPL 288
>SB_6476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 162 NEAIELIGLVRERKCLWDRRCTEYRNKYDRLR 257
+E +LI L ER CLWD EY K +R R
Sbjct: 35 HEVEQLIDLFEERPCLWDVSNKEYYQKGNRQR 66
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 269 SPPKPQPVVLVPILCTSPVPQ-AFSFTN*ADQFYGFILRWYNTFRIRHPNH 120
+PPKPQ +L P+ T P PQ S T+ +YN + H NH
Sbjct: 684 TPPKPQHTLLQPVTITPPKPQHNTSTTSHHYTTKTTTQHFYNQSPLHHQNH 734
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 511 ATEDSIEWLNEVYVDESAVEDPPPKKPKLEYPQDENSIAHFLMNLVQR 654
A +D+++ +E D A +DPP KKP+L D++ A L + ++
Sbjct: 228 AADDNVD--DEKDDDGEAGDDPPQKKPRLGDTDDDDFAAQLLEDTYEK 273
>SB_50551| Best HMM Match : Extensin_2 (HMM E-Value=0.41)
Length = 376
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 481 SRQSTLRRGHATEDSIEWLNEVY-VDESAVEDPPPKKPKLEYPQD 612
S QS RGH W E VD S PP P+ E P D
Sbjct: 210 SAQSRYPRGHRKSQIPPWTRERSPVDSSRARSPPWAAPQQETPMD 254
>SB_23074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 369
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 495 SQTRTRN*RFNRMVERSLC*RERCRGSTTQETQTRISTRREQHSSFSHELGAARR 659
+ TR RN R + S RCR STTQ+ +T EQ++ + ++G ++
Sbjct: 178 NNTRCRN-RTTEQHKMSEQHNTRCRNSTTQDVRTAQHKMSEQNNRTTQDVGTEQQ 231
>SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15)
Length = 802
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +1
Query: 601 YPQDENSIAHFLMNLVQREENEDRAFFTSITSAVSSLSERSKFE 732
+ +D +++ H L NL++R + E R + +A + + E ++ E
Sbjct: 391 HAKDRDNLLHMLFNLIKRPDEEQRQMIMNGCAAFAQVVEPTRVE 434
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 574 PPPKKPKLEY----PQDENSIAHFLMNLVQREENEDRAFFTSITSAVS 705
PPP P EY P + NS+A L+ L++ E +E+ + T A++
Sbjct: 390 PPPYYPPQEYQAPPPYNPNSLARLLVFLLREESSENSQENMAFTGALT 437
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 555 RERCRGSTTQETQTRISTRREQHSSFSHELGAARRKRG 668
R R ++ T+TR STRR H+S S E +R RG
Sbjct: 264 RSRSTATSRGRTRTRTSTRRRSHTS-SREGTRSRSTRG 300
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 239 QVRQAEAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNIRDAYVKSLRMGRNRVK 409
+V+ A+ E CE L HR+ N+ NK K+ ++ KSLR N+++
Sbjct: 397 KVKDAKEHFEKCEFLTKEMHRLKNEWSNKE--KEYKRMATEQEKESKSLRKKNNQLE 451
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 717 LRQT-RDGRRYGSEERSILVFFALHQVHEKMSYAVLVLWIF 598
+RQ + YG R IL F L VH++M+ + W F
Sbjct: 1373 IRQVIKTANEYGKNARIILELFRLLDVHDEMALNDIQFWSF 1413
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,584,419
Number of Sequences: 59808
Number of extensions: 426448
Number of successful extensions: 1277
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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