Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30754
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P...    80   2e-15
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P...    58   6e-09
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP...    57   1e-08
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu...    56   3e-08
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    53   2e-07
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P...    49   4e-06
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P...    48   5e-06
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu...    48   8e-06
At4g08640.1 68417.m01421 hypothetical protein low similarity to ...    31   0.79 
At5g05680.1 68418.m00625 nuclear pore complex protein-related co...    29   3.2  
At1g61970.1 68414.m06990 mitochondrial transcription termination...    28   7.3  

>At3g03960.1 68416.m00415 chaperonin, putative similar to
           SWISS-PROT:P42932- T-complex protein 1, theta subunit
           (TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 549

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 34/57 (59%), Positives = 44/57 (77%)
 Frame = +1

Query: 85  GVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 255
           G+  MLK+G R  SGL+EAV +NI ACK+ +   R++ GPNGMNKM+INH+DK FVT
Sbjct: 10  GIQSMLKEGYRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVT 66



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 34/81 (41%), Positives = 51/81 (62%)
 Frame = +3

Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
           +DA TI+ EL+++HPAAKL+VLA++ Q  E+G G N  I  +G          R+G+  S
Sbjct: 67  NDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPS 126

Query: 435 QIADGYERALDKCLEILPSLI 497
           +I  GY +A+ K +EIL  L+
Sbjct: 127 EIISGYTKAVSKAVEILEQLV 147



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = +2

Query: 512 DTKNIKEVTKGIVAAIMSKQYGHEQFISELVTKACVAILPEK-TTFNVDNVRVCKILGAG 688
           D +N  EV   + AA+ SKQ+G E+ I  LVT AC+ + P+  T FNVDNVRV K+LG G
Sbjct: 155 DVRNKDEVISRMRAAVASKQFGQEEIICSLVTDACIQVCPKNPTNFNVDNVRVSKLLGGG 214

Query: 689 LLQSEVLSGMVFR 727
           L  S ++ GMV +
Sbjct: 215 LHNSCIVRGMVLK 227


>At5g26360.1 68418.m03151 chaperonin, putative similar to
           SWISS-PROT:P50143- T-complex protein 1, gamma subunit
           (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 555

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 31/80 (38%), Positives = 42/80 (52%)
 Frame = +3

Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
           +D   I+RELDV HPAAK M+  S+ QD EVG GT  VIVL+G                +
Sbjct: 59  NDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPT 118

Query: 435 QIADGYERALDKCLEILPSL 494
            I   Y +AL+  + +L  +
Sbjct: 119 VICRAYIKALEDSIAVLDKI 138



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 97  MLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIIN 231
           +L D  +  SG  +  + NI A K  A  +R+  GP  M KM+++
Sbjct: 7   VLSDSLKRESG-SKVHHGNIQASKAVADIIRTTLGPRSMLKMLLD 50


>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
           TCP-1-alpha / chaperonin (CCT1) identical to
           SWISS-PROT:P28769- T-complex protein 1, alpha subunit
           (TCP-1-alpha) [Arabidopsis thaliana]
          Length = 545

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = +3

Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
           +D  TI+R L+VEHPAAK++V  +++QD EVG GT  V++++           R  +  +
Sbjct: 59  NDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPT 118

Query: 435 QIADGYERAL-DKCLEILPSLI 497
            I  GY  A+ + C  I   L+
Sbjct: 119 SIISGYRLAMRESCKYIEEKLV 140



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +1

Query: 148 RNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 255
           +N+ AC+  +  V+++ GP G++KM+++ I    +T
Sbjct: 23  QNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTIT 58


>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 29/77 (37%), Positives = 44/77 (57%)
 Frame = +3

Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
           +D  TI+ ++DV++  AKLMV  S+ QD E+G GT  V+V++G            G+   
Sbjct: 68  NDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPI 127

Query: 435 QIADGYERALDKCLEIL 485
           +IA+GYE A    +E L
Sbjct: 128 RIAEGYEMASRVAVEHL 144



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 136 EAVYRNINACKQFAQSVRSAYGPNGMNKMI 225
           +A   NI A K  A+ +RS+ GP GM+KM+
Sbjct: 28  DAQKANIAAGKAVARILRSSLGPKGMDKML 57


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/83 (31%), Positives = 46/83 (55%)
 Frame = +3

Query: 246 ICYSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGV 425
           I  +D  TI+ +++V  PAAK++V  S+ QD+  G GT  V+V++G            G+
Sbjct: 65  IITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGI 124

Query: 426 TTSQIADGYERALDKCLEILPSL 494
             + I+D   +A  K ++IL ++
Sbjct: 125 HPTVISDSLHKACGKAIDILTAM 147



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 133 EEAVYRNINACKQFAQSVRSAYGPNGMNKMI 225
           E+  + NIN+ +  + +VR++ GP GM+KMI
Sbjct: 27  EDIRFANINSARAVSDAVRTSLGPKGMDKMI 57


>At5g20890.1 68418.m02481 chaperonin, putative similar to
           SWISS-PROT:P78371- T-complex protein 1, beta subunit
           (TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 527

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/43 (48%), Positives = 33/43 (76%)
 Frame = +3

Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSG 383
           +D  TI++ L +++PAAK++V  S++QD EVG GT  V+VL+G
Sbjct: 60  NDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAG 102


>At3g11830.1 68416.m01450 chaperonin, putative similar to
           SWISS-PROT:P80313 T-complex protein 1, eta subunit
           (TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 557

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 24/69 (34%), Positives = 37/69 (53%)
 Frame = +3

Query: 255 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTS 434
           +D  TI++ LD+ HPAAK++V  ++ QD+EVG GT  V++L+             GV   
Sbjct: 63  NDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQ 122

Query: 435 QIADGYERA 461
            +   Y  A
Sbjct: 123 NLIRSYRTA 131



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/54 (42%), Positives = 30/54 (55%)
 Frame = +1

Query: 97  MLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTV 258
           +LK+G     G  + V  NINAC      VR+  GP GM+K+I  H DK  VT+
Sbjct: 11  LLKEGTDTSQGKAQLV-SNINACTAVGDVVRTTLGPRGMDKLI--HDDKGSVTI 61


>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 459

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 26/68 (38%), Positives = 38/68 (55%)
 Frame = +3

Query: 282 LDVEHPAAKLMVLASQMQDAEVGHGTNFVIVLSGXXXXXXXXXXRLGVTTSQIADGYERA 461
           +DV++  AKLMV  S+ QD E+G GT  V+V++G            G+   +IA+GYE A
Sbjct: 1   MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60

Query: 462 LDKCLEIL 485
               +E L
Sbjct: 61  SRVAVEHL 68


>At4g08640.1 68417.m01421 hypothetical protein low similarity to
           chaperonin-containing-TCP1 theta subunit from
           Tetrahymena pyriformis [GI:4959731], Homo sapiens
           [SP|P50990]
          Length = 171

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 641 TFNVDNVRVCKILGAGLLQSEVLSGMVFR 727
           T N+D+V V KILG    +S V+ G+VF+
Sbjct: 2   TMNIDDVHVAKILGVDSRKSCVVCGIVFK 30


>At5g05680.1 68418.m00625 nuclear pore complex protein-related
           contains weak similarity to Nuclear pore complex protein
           Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
           protein) (Swiss-Prot:Q99567) [Homo sapiens]
          Length = 810

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 518 KNIKEVTKG-IVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVCKILGAGLL 694
           K+ ++  KG +VAA   KQY  +  I +       + L + +  N DN +  KI+ + L 
Sbjct: 744 KSTQKSHKGTVVAASQKKQYSKKNLIQDTQMSQLQSTLAKLSLMNSDNSKKVKIVESALK 803

Query: 695 QSE 703
             E
Sbjct: 804 SQE 806


>At1g61970.1 68414.m06990 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 418

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 211 MNKMIINHIDKQFVTVMLA 267
           +N+ + NH+DKQ VT ++A
Sbjct: 395 LNRYVANHVDKQLVTELMA 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,390,211
Number of Sequences: 28952
Number of extensions: 271579
Number of successful extensions: 571
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)