Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30752
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 29   2.8  
SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     28   6.5  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/98 (21%), Positives = 46/98 (46%)
 Frame = +3

Query: 75  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAY 254
           S++  +++  +  NS + + +     + +  +E +K E+   ++++          E++ 
Sbjct: 36  SELREEVILLRKENSQIESTFVEKNAELRQHFEIEKEELNRKLIHEKEELRYSLEAEFSQ 95

Query: 255 NFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL 368
            F + +  T SG++ QL  DL   KTR     SA + L
Sbjct: 96  KFVNESA-TQSGVIQQLDGDLRMMKTRCGELESAMLEL 132


>SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 156 SKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYNFGSRAPRTSSGIVSQLSSDLSSPKTR 335
           S+ L +EKK E ++ +    + N K + + +  NF +  P   S    +L ++ +S  + 
Sbjct: 224 SQRLEKEKKKEWVSCIKKTEVTNRKRSLVSFLRNFATGNPFFPSFFHYELPAEEASGTST 283

Query: 336 LSLCTSATVSL 368
             L T   VSL
Sbjct: 284 GRLITRCQVSL 294


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 702 GLNRPRQCQSLAVFTVVDVEQDVIAVLSRLQV 607
           G +RP+  + L V  + D+E++ + VL+RLQ+
Sbjct: 458 GDSRPKPRRKLTVLEIGDLEREYLLVLARLQL 489


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 70  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 201
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +3

Query: 111  YNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKL--IRNNKMNCMEYAYNFGSRAPRTS 284
            ++SV    +DS+V   + L+E KK     +++  L  +   + N    +    SR P  S
Sbjct: 910  FHSVGGTSWDSSVADEEDLFEVKKKPDKPSLLAALKPVARQESNASLKSNKSASRIPVRS 969

Query: 285  SGIVSQLSSDLSS---PKTRLSLCTS 353
              + S +S D  S   P +R+ + +S
Sbjct: 970  DSVKSSVSVDFKSKEPPASRIPVLSS 995


>SB_45697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 734

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +3

Query: 75  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAY 254
           SDVP  +     Y +  + D DSA + S       KS +  N V +        C   + 
Sbjct: 42  SDVPEPVAASTPYQTRELRDMDSANDGSSLKKHTDKSNMAHNAVERFSTETTSVCRSVSE 101

Query: 255 NFGSRAPRTSSGIVSQLSSD 314
              S+ P +S  +  +  SD
Sbjct: 102 ESQSQEPISSVLVHDESFSD 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,012
Number of Sequences: 59808
Number of extensions: 366966
Number of successful extensions: 1070
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)