Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30752
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b... 33 0.14
At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase f... 31 1.00
At5g16350.1 68418.m01911 expressed protein 28 5.3
At3g49200.1 68416.m05377 hypothetical protein 28 7.0
At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t... 27 9.3
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica... 27 9.3
At1g59453.1 68414.m06679 transcription factor-related weak simil... 27 9.3
At1g59077.1 68414.m06670 hypothetical protein 27 9.3
At1g58766.1 68414.m06659 hypothetical protein 27 9.3
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 27 9.3
>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
binding region-containing protein similar to U4/U6
snRNP-associated 61 kDa protein [Homo sapiens]
GI:18249847; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 485
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 3 LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 182
+D + P+ +I+ + V +L S +P D+L++ L D DSA +K E K
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213
Query: 183 SEVITNV 203
+ N+
Sbjct: 214 GSIAPNL 220
>At1g76730.1 68414.m08930 5-formyltetrahydrofolate cyclo-ligase
family protein contains Pfam profile PF01812
5-formyltetrahydrofolate cyclo-ligase
Length = 354
Score = 30.7 bits (66), Expect = 1.00
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 273 PRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 365
PR +G S L SDL P+T + CTS V+
Sbjct: 171 PRLRTGFFSVLESDLLKPETIMEACTSVGVA 201
>At5g16350.1 68418.m01911 expressed protein
Length = 488
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 607 YLQPAKYGNDVLFYIYNREYSKALTLSRTVEPS 705
Y+ P+ YG+ I+ Y+ +T++ TV+P+
Sbjct: 421 YISPSSYGHSHALLIHYTSYAGEMTITITVDPT 453
>At3g49200.1 68416.m05377 hypothetical protein
Length = 507
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 607 YLQPAKYGNDVLFYIYNREYSKALTLSRTVEPS 705
Y+ P+ YG+ ++ + Y LT+S TV+P+
Sbjct: 445 YIAPSVYGHPHALTMHFQSYMNKLTISLTVDPT 477
>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
thiol reductase family protein / GILT family protein
similar to SP|P13284 Gamma-interferon inducible
lysosomal thiol reductase precursor {Homo sapiens};
contains Pfam profile PF03227: Gamma interferon
inducible lysosomal thiol reductase (GILT)
Length = 231
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 461 IALWENNKVYFKILNTNVTNTWYWESAL 544
I W N ++++K + TNT WES +
Sbjct: 107 IRTWPNQRLHYKFIRCVETNTNAWESCV 134
>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
Length = 802
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 505 H*RNQYLVLGVGTNWNGDHMAF 570
H N L L VGTN NG H AF
Sbjct: 271 HHYNSSLELAVGTNNNGGHFAF 292
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 96 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 203
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581
>At1g59077.1 68414.m06670 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 96 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 203
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g58766.1 68414.m06659 hypothetical protein
Length = 665
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 96 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 203
LEE N VV +DY ++ +K H+ E +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 27.5 bits (58), Expect = 9.3
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 49 SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 144
+W + +L +P ++ FW + +ASS + +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,035
Number of Sequences: 28952
Number of extensions: 257474
Number of successful extensions: 1002
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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