Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30751
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             100   1e-21
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   100   2e-21
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   1.3  
At3g30340.1 68416.m03831 nodulin MtN21 family protein similar to...    29   3.0  
At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   6.9  
At3g59300.1 68416.m06610 expressed protein hypothetical protein ...    27   9.2  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  100 bits (239), Expect = 1e-21
 Identities = 54/84 (64%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
 Frame = -3

Query: 500 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVL 327
           +LSVL LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR+YV   +R  
Sbjct: 107 DLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTF 166

Query: 326 PAKEGKENAKPRHKAPKIQRLVTP 255
             K+GK+ +    KAPKIQRLVTP
Sbjct: 167 TNKKGKKVS----KAPKIQRLVTP 186



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 2/61 (3%)
 Frame = -1

Query: 676 EGLCIRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCILT 503
           +G   ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCI++
Sbjct: 46  KGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVS 105

Query: 502 P 500
           P
Sbjct: 106 P 106



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 258 PLVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 118
           PL LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 186 PLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 55/84 (65%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
 Frame = -3

Query: 500 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVL 327
           +LSVL LVIV+KG  ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR YV   +R  
Sbjct: 107 DLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKF 166

Query: 326 PAKEGKENAKPRHKAPKIQRLVTP 255
             K+GKE +    KAPKIQRLVTP
Sbjct: 167 TNKKGKEVS----KAPKIQRLVTP 186



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 2/61 (3%)
 Frame = -1

Query: 676 EGLCIRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCILT 503
           +G   ++ GG DKQGFPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCI++
Sbjct: 46  KGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVS 105

Query: 502 P 500
           P
Sbjct: 106 P 106



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 258 PLVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 118
           PL LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 186 PLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -3

Query: 443 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 297
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At3g30340.1 68416.m03831 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 364

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 139 LGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTLQN*GVTSLWILGALCL 294
           LG ++ +C    +   +G ALS       ET T T     +T  W +G++ L
Sbjct: 139 LGTMICICGALVLTLYKGTALSREHSTHMETHTRTDSTGAMTQKWAMGSIML 190


>At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 681

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 523 VRGCILTPISRSWLLLLCARVPRKFLD*LMEMYPAV*VPNVLPKSVS 383
           + G IL P + S L+  CA    ++LD  +++   +  PN+   +V+
Sbjct: 78  INGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVT 124


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 455 EIPGLTDGNVPRRLGPKRASKIRKL 381
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At3g59300.1 68416.m06610 expressed protein hypothetical protein
           T2J13.20 - Arabidopsis thaliana, PIR:T46116
          Length = 459

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 478 TRAKTERLASKYIHELIYVFSLHRGAVCN 564
           TRA TE  A K IH+L++  S  R   C+
Sbjct: 422 TRATTEMAAEKKIHQLLFPRSRRRKLKCH 450


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,275
Number of Sequences: 28952
Number of extensions: 277769
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)