Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30750
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039...    30   1.6  
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    29   2.9  
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377...    28   6.6  

>09_04_0463 -
           17803120-17803233,17803647-17803758,17803866-17803927,
           17804171-17804269,17804370-17804474,17804560-17804639,
           17806445-17806517,17806611-17806700,17807215-17807277,
           17808104-17808155,17808504-17808604,17809139-17809238,
           17809683-17809746,17810127-17810184,17810549-17810635,
           17810736-17810870,17810950-17811054,17811247-17811351,
           17811427-17811663,17812287-17812380,17812863-17813020,
           17813289-17813363,17813448-17813512,17814206-17814260
          Length = 762

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 168 YIGNFRSVSNAIIYLFLFTFNAQFLNNLLIVFS*LGNIIPLHHS-TSNLDFKHISRWVYI 344
           Y+ +FR + N + Y+     NA+ LN     FS  GN +  +H     L    +  WV  
Sbjct: 362 YMTSFRGIDNKVYYMLDLNKNAELLN-----FSGCGNTLNCNHPVVKELILDSLRHWVEE 416

Query: 345 HH 350
           +H
Sbjct: 417 YH 418


>02_04_0371 +
           22434710-22435102,22435428-22435624,22435707-22435824,
           22436458-22436574,22436702-22436803,22437431-22437487,
           22437976-22438044,22438423-22438533,22438597-22438791,
           22439023-22439121,22439656-22440222,22440344-22440568,
           22441036-22441338,22441640-22441707,22441947-22442105,
           22442230-22442475,22442549-22442680,22443243-22443351,
           22444131-22444283,22444359-22444601,22444695-22444862,
           22445013-22445156,22445238-22445699,22446495-22446791,
           22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 340 TFTMADIHSCRHRPKHVISNPPDSILVLLGTTSISHCN 453
           ++ + D H CRH P HV+++   + +      S+  CN
Sbjct: 696 SYILIDAHPCRHDPSHVVTHRIQATITEF-AASLCQCN 732


>12_02_0405 -
           18635503-18635871,18636703-18636817,18636970-18637721,
           18638540-18638542
          Length = 412

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 35  FHQRLHLGYSYFACSMPMG---SKLIKNKST*SYRTVSLSLYNVVQ 163
           F +RL++GY +  CS+  G   S+ I+      ++T  L +++  +
Sbjct: 334 FRERLNIGYQHLPCSLKAGSILSRAIEGTPVAKFKTEELRMFSYTE 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,555,182
Number of Sequences: 37544
Number of extensions: 304513
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)