Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30750
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20650.1 68414.m02587 protein kinase family protein contains ...    31   1.0  
At3g60470.1 68416.m06763 hypothetical protein contains Pfam prof...    30   1.8  
At1g68890.1 68414.m07884 menaquinone biosynthesis protein-relate...    30   1.8  
At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6) al...    29   3.2  
At4g13270.1 68417.m02076 expressed protein                             27   9.6  

>At1g20650.1 68414.m02587 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 585

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 564 FIKSTTGSETRPTEKLSG-LVYGLVYSPSPSSQATGST 454
           F+ S  GS+T  TE +SG LV G V SP P   A   T
Sbjct: 234 FVVSVHGSDTTGTESISGILVNGKVNSPIPGGGARSFT 271


>At3g60470.1 68416.m06763 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 540

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +3

Query: 69  LLVQCLWGPN*LKINLLDLIALYRYPYIMLYKSYIGNFRSVSNAII 206
           L + CLW P+  +I L +++AL +  Y   +K+Y+ NF S  + +I
Sbjct: 393 LKIPCLWVPDDAEITLRNIMALEQCHY--PFKAYVCNFVSFLDFLI 436


>At1g68890.1 68414.m07884 menaquinone biosynthesis protein-related
           similar to menaquinone biosynthesis protein menD
           [SP|P17109][E. coli] ; Pfam HMM hit:
           2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic
           acid synthase / 2-oxoglutarate decarboxylase
          Length = 894

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 337 FTFTMADIHSCRHRPKHVISNPPDSILV 420
           F + + D H CRH P H++++   S +V
Sbjct: 663 FAYILVDKHPCRHDPSHLVTHRVQSNIV 690


>At5g42480.1 68418.m05171 DNAJ plastid division protein (ARC6)
           almost identical to dnaJ plastid division protein ARC6
           (GI:33436339) [Arabidopsis thaliana];low similarity to
           cell division protein Ftn2 [Synechococcus sp. PCC 7942]
           GI:16226084; contains Pfam profile PF00226: DnaJ domain
          Length = 801

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 310 KLLVEWCKGMIFPNYENTISKLFK 239
           KLL  W  G++FP + +T  K FK
Sbjct: 460 KLLETWLAGVVFPRFRDTKDKKFK 483


>At4g13270.1 68417.m02076 expressed protein 
          Length = 215

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 504 YGLVYSPSPSSQATGSTITMT 442
           YG+ Y+P PSSQ + S I +T
Sbjct: 9   YGIPYTPLPSSQPSQSVILLT 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,016
Number of Sequences: 28952
Number of extensions: 260862
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)