Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30749
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 31 0.97
SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_48092| Best HMM Match : PMG (HMM E-Value=7.6) 28 9.1
SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5) 28 9.1
SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 28 9.1
>SB_18508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 31.9 bits (69), Expect = 0.56
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 1/142 (0%)
Frame = +2
Query: 71 SSNANSSETGNINHKSIPHQMHIQNW*TKRNSCIQCVHVNNSRHNRQYRPSAYLLHENNF 250
S +A S++T + N + HQ N Q +H N S ++Q PS +H N
Sbjct: 486 SQSALSNQTMHSNRSTPSHQKSPSN---------QTMHSNRSTPSKQSSPSNQTMHSNRS 536
Query: 251 TSGDQVSSAEIGENLVLQVDVQPSSIYGGFARSCVAKT-SEVSTNVENEYLVTDEDGCAK 427
T +Q + + + SS SC T + +++ +ENE ++ E +
Sbjct: 537 TPSNQSTPSNQTMHSNRSTPSNQSSPSNQRTTSCGLTTRNRITSTIENEKILKRESDVER 596
Query: 428 DPAIFGEWERSEDGSALRAAFN 493
+E S+ FN
Sbjct: 597 PIDSSMVYESSQSSYGTSGHFN 618
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 469 QRVACRFQCFQVPRSDNIRFQCNIRVCFGKCVPVNCRGSDAYGKRRKREVTDE-STALTM 645
QR + F+ R+D + C + VC C Y +RR+RE E T +
Sbjct: 209 QRFNLKAFYFETFRTDEVYLHCEVLVCQRSDKKSRCTKGCPYQRRRRRETGIEYQTTQQL 268
Query: 646 PVGQLR 663
VG +R
Sbjct: 269 TVGPIR 274
>SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +3
Query: 69 VLVMQTHLKLVTSTTKAFHIKCIYKTGEQNVTLAFNVSMLTTAGTIANTGPPPTCSMRII 248
VL M LVT +T++ K +Y Q TLAFN S A I N P S+ +
Sbjct: 233 VLYMLNLPDLVTRSTRSTRRKELYYNQLQANTLAFNYSFFARAIRIWNLLPNDVKSINTL 292
Query: 249 SRLETKSVP 275
++ + P
Sbjct: 293 AKYKAAVQP 301
>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 24 FGDCGLVHVNGLASFVLVMQTHLKLVTSTTKAFHIKCIYK 143
F D + G L +H+ VT TTK H C YK
Sbjct: 87 FEDLSSISTYGFRGEALASISHVAHVTITTKTAHSSCAYK 126
>SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 6 VFFTVHFGDCGLVHVNGLASF 68
V+ VHF CG++ VNG A F
Sbjct: 354 VYGNVHFSTCGMMPVNGNAHF 374
>SB_48092| Best HMM Match : PMG (HMM E-Value=7.6)
Length = 294
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 53 WLSKLRSSNANSSETGNINHKSIPHQMHIQNW*TKRNSCIQCVHVNNSRHNRQ 211
WL K ++N NSS + N N S N + NS + NN+ +N +
Sbjct: 60 WLDKNNNNNNNSSSSNNSNSNSSSSSSSSSNSNSNSNSNNNNNNNNNNNNNNK 112
>SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5)
Length = 210
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 96 LVTSTTKAFHIKCIYKTGEQNVTLAFNVSMLTTAGTIANTGPPPTCSMRIISRLETKSVP 275
LVT +T++ K +Y Q TLAFN S A I N P S+ +++ + P
Sbjct: 137 LVTRSTRSTRRKELYYNQLQANTLAFNYSFFARAIRIWNLLPNDVKSINTLAKYKAAVQP 196
>SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 96 LVTSTTKAFHIKCIYKTGEQNVTLAFNVSMLTTAGTIANTGPPPTCSMRIISRLETKSVP 275
LVT +T++ K +Y Q TLAFN S A I N P S+ +++ + P
Sbjct: 291 LVTRSTRSTRRKELYYNQLQANTLAFNYSFFARAIRIWNLLPNDVKSINTLAKYKAAVQP 350
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 96 LVTSTTKAFHIKCIYKTGEQNVTLAFNVSMLTTAGTIANTGPPPTCSMRIISRLETKSVP 275
LVT +T++ K +Y Q TLAFN S A I N P S+ +++ + P
Sbjct: 497 LVTRSTRSTRRKELYYNQLQANTLAFNYSFFARAIRIWNLLPNDVKSINTLAKYKAAVQP 556
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,378,845
Number of Sequences: 59808
Number of extensions: 500925
Number of successful extensions: 2483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2481
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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