Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30749
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04545.1 68417.m00665 Ulp1 protease family protein contains P...    29   3.2  
At3g16030.1 68416.m02027 lectin protein kinase family protein co...    29   4.3  
At3g47750.1 68416.m05202 ABC transporter family protein probable...    28   5.6  
At1g29750.2 68414.m03638 leucine-rich repeat transmembrane prote...    28   7.4  
At1g29750.1 68414.m03637 leucine-rich repeat transmembrane prote...    28   7.4  

>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 882

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 577 RGSDAYGKRRKREVTDESTA-LTMPVGQLREEVTVESNQILTTQ 705
           RG DA  KRRK++ + +  A  T P+ +++E+  V S +I  T+
Sbjct: 475 RGDDASQKRRKKKSSSDMDAQSTRPLKRVKEKDQVSSTKIGNTE 518


>At3g16030.1 68416.m02027 lectin protein kinase family protein
           contains Pfam domains PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 850

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 395 YLVTDEDGCAKDPAIFGEWERSEDGSALRAAFNAFKFPVVTIYDSNATFASALENAYRLT 574
           YL   +  C  D  + G++ +  DG  L +AFN FK       +S+  +     N + L+
Sbjct: 14  YLFLGQSCCQTDTLLQGQYLK--DGQELVSAFNIFKLKFFNFENSSNWYLGIWYNNFYLS 71

Query: 575 VAV 583
            AV
Sbjct: 72  GAV 74


>At3g47750.1 68416.m05202 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 944

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 129 KCIYKTGE---QNVTLAFNVSMLTTAGTIANTGPPPTCSMRIISRLETKSV 272
           +CI+K G+   +  +     S LT A   A   PPP   +  I R ET+ V
Sbjct: 67  RCIHKNGDGKCERKSCGLQYSSLTQASFCAFPNPPPLLPLLQIPRPETRLV 117


>At1g29750.2 68414.m03638 leucine-rich repeat transmembrane protein
           kinase, putative / serine/threonine kinase, putative
           (RKF1) similar to receptor-like serine/threonine kinase
           GI:2465923 from [Arabidopsis thaliana]; identical to
           cDNA receptor-like serine/threonine kinase (RKF1)
           GI:2465922
          Length = 1021

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 550 FGKCVPVNCRGSDAYGKRRK 609
           +  C+ VNC GSD Y K +K
Sbjct: 414 YSSCLHVNCGGSDMYVKEKK 433


>At1g29750.1 68414.m03637 leucine-rich repeat transmembrane protein
           kinase, putative / serine/threonine kinase, putative
           (RKF1) similar to receptor-like serine/threonine kinase
           GI:2465923 from [Arabidopsis thaliana]; identical to
           cDNA receptor-like serine/threonine kinase (RKF1)
           GI:2465922
          Length = 1006

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 550 FGKCVPVNCRGSDAYGKRRK 609
           +  C+ VNC GSD Y K +K
Sbjct: 399 YSSCLHVNCGGSDMYVKEKK 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,870
Number of Sequences: 28952
Number of extensions: 333821
Number of successful extensions: 997
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)