Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30748
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   107   7e-24
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   106   1e-23
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   5.5  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   5.5  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  107 bits (257), Expect = 7e-24
 Identities = 47/72 (65%), Positives = 56/72 (77%)
 Frame = +3

Query: 27  MAFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 206
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 207 TCQVAYSRIEGD 242
             Q+  + I GD
Sbjct: 61  VAQIVSASIAGD 72



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 35/69 (50%), Positives = 52/69 (75%)
 Frame = +1

Query: 511 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 690
           +KGA+DGGL++PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  
Sbjct: 162 LKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTH 221

Query: 691 FSKYIKLGV 717
           FS YIK GV
Sbjct: 222 FSAYIKKGV 230



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 40/84 (47%), Positives = 47/84 (55%)
 Frame = +2

Query: 257 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 436
           AY+HELP+YG+ VGLTNYAAAY TG                          +++VEP D+
Sbjct: 78  AYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDS 137

Query: 437 GPGAFRCYLDVGLARTTTGARVFG 508
               FR  LDVGL RTTTG RVFG
Sbjct: 138 -RRPFRALLDVGLIRTTTGNRVFG 160


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  106 bits (255), Expect = 1e-23
 Identities = 47/72 (65%), Positives = 56/72 (77%)
 Frame = +3

Query: 27  MAFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 206
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 207 TCQVAYSRIEGD 242
             Q+  + I GD
Sbjct: 61  VAQIVSASIAGD 72



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 35/69 (50%), Positives = 52/69 (75%)
 Frame = +1

Query: 511 MKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQ 690
           +KGA+DGGL++PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +  
Sbjct: 162 LKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTH 221

Query: 691 FSKYIKLGV 717
           FS YIK GV
Sbjct: 222 FSAYIKKGV 230



 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 40/84 (47%), Positives = 47/84 (55%)
 Frame = +2

Query: 257 AYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDN 436
           AY+HELP+YG+ VGLTNYAAAY TG                          +++VEP D+
Sbjct: 78  AYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDS 137

Query: 437 GPGAFRCYLDVGLARTTTGARVFG 508
               FR  LDVGL RTTTG RVFG
Sbjct: 138 -RRPFRALLDVGLIRTTTGNRVFG 160


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 45  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 218
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 45  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 218
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,569,137
Number of Sequences: 28952
Number of extensions: 320121
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)