Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30747
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0029 + 21694448-21694567,21694666-21695117,21695214-216955... 29 2.9
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.9
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 3.8
12_02_1197 + 26915933-26916298 28 6.7
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 28 6.7
02_01_0051 - 385738-385968,386439-386864 28 6.7
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 28 8.8
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 8.8
>05_05_0029 +
21694448-21694567,21694666-21695117,21695214-21695529,
21695863-21697122
Length = 715
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = +2
Query: 221 GNLYIGFELGSTRSSCHQLEQLDAMLDQELALEGRAYGNDALVADEPLPLANAHALHGVP 400
G++ +G +L +C Q ++ + D+E++ G + D P + ++ G+P
Sbjct: 297 GDVELGNKLNQIEKACEQRDRAAQIKDKEVSEVGGPSDKNLFADDSPSECLSTDSVFGLP 356
Query: 401 P 403
P
Sbjct: 357 P 357
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 359 PLPLANAHA-LHGVPPMLSSVLPETSQPSSSRPSLFKDDALN 481
P P A +H H P +L+S+LP PSSS PSL +LN
Sbjct: 2522 PSPYATSHGNQHQRPSILASLLPFVL-PSSSNPSLTAPLSLN 2562
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 87 MNPEYPPSEVYSTSEPPPAYRHRVSTSVQ 173
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 57 HQPDSMA-TITMNPEYPPSEVYSTSEPPPAYRHRVSTS 167
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 136 GGSDVLYTSEGGYSGFIVIVAIESGW 59
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 353 DEPLPLANAHALHGVPPMLSSVLPE---TSQPSSSRPSLFKDDALNHAESKINED 508
+E P +N ++ +PP +PE T +P SS ++KD+ +S N+D
Sbjct: 265 NEVSPASNDSSIDVLPPREGLEVPESVATVKPGSSTADVYKDEVEEDMDSDKNKD 319
>02_01_0051 - 385738-385968,386439-386864
Length = 218
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 60 QPDSMATITMNPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILG 224
QP + A +PE PP + PPPA + + ++A A + + F+ G
Sbjct: 82 QPAAAAAAAEDPEKPPVQEADPPPPPPALVYS-AAGTKLAGAAECAICLAEFVDG 135
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -1
Query: 462 KRLGREDDGWLVSGNTEDSMGGTPCKAWAFASGKGSSATRASFP*ALP 319
+R+GR GW+V G S G+ A G A P +LP
Sbjct: 712 RRIGRRG-GWIVGGGVRRSRSGSVSSVGAGPDGSAKGAGGGGSPSSLP 758
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 179 EDCSTNSGRFLLHLGNL 229
EDC G FL HLGNL
Sbjct: 574 EDCDITGGYFLKHLGNL 590
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,807,345
Number of Sequences: 37544
Number of extensions: 442467
Number of successful extensions: 1577
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -