Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30746
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      53   2e-07
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      46   3e-05
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      42   6e-04
SB_57753| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_7462| Best HMM Match : PspA_IM30 (HMM E-Value=0.15)                 29   3.5  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       29   4.6  
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)                 29   4.6  
SB_59431| Best HMM Match : Prefoldin (HMM E-Value=0.4)                 28   6.0  

>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 20/42 (47%), Positives = 31/42 (73%)
 Frame = +1

Query: 544 QQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSW 669
           +++NAWV+ +TKG I  ++    IN+LT +I+ NA+YFKG W
Sbjct: 99  KEVNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVW 140


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +1

Query: 550 INAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSWMQ 675
           +N WV  KTK  I +++ +   N  T + + NA+YFKGSWM+
Sbjct: 133 VNRWVEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMK 174


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 544 QQINAWVNGKTKGLIPSIVDQAQINALTEMIVTNALYFKGSW 669
           + +N WV  +TK  I  ++     N LT + + NA+YFKG W
Sbjct: 94  KHVNQWVEERTKKKICDLIAPGVFNMLTRLTLVNAIYFKGMW 135



 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +2

Query: 278 MLLEGATGETADEIRSALRLSSVKDDL--REQLNLYLK-ALHSNSTETVLENANAIFVSN 448
           M+  GA GETADE+ +A+     K  L  + Q +  L  AL++      +  AN +F+  
Sbjct: 1   MVYAGARGETADEMATAMHWEGHKPMLPSKHQEHKELSVALNNPGATNEMSIANNLFLQK 60

Query: 449 KLRLKKDYETNLRYVYFSEVS 511
              + K++    +  Y +++S
Sbjct: 61  DFSILKEFTDICQKYYDADIS 81


>SB_57753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +2

Query: 278 MLLEGATGETADEIRSALRLSSVKDDLREQLNLYLKALHSNSTETVLENANAIFVSNKLR 457
           MLL   T E    +    RLS+V+ +L E L+LY+           LE+   I+ + K  
Sbjct: 13  MLLSTITAEIFTSMDQLQRLSTVEKNLHETLDLYIMQERKR-----LEDLKGIYAAKKEE 67

Query: 458 LKK 466
           LKK
Sbjct: 68  LKK 70


>SB_7462| Best HMM Match : PspA_IM30 (HMM E-Value=0.15)
          Length = 393

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +2

Query: 329 LRLSSVKDDLREQLNLYLKALHSNSTETVLENANAIFVSNKLRLKKDYETNL 484
           LRL  +  ++++ LN Y K LH+ + E+       I   N+L  K D ETNL
Sbjct: 226 LRLKLMSGNVQQILNTYKKKLHTLTMESE-RLRTEIGQRNELLFKIDAETNL 276


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +1

Query: 298  GGDGRRNKKCFETFVSERR--FKGTIES 375
            GG+ R+ ++CF+T++ E+R    G IES
Sbjct: 1888 GGEARKLQQCFQTYLGEQRSEVSGIIES 1915


>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
          Length = 419

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 317 IRSALRLSSVKDDLREQLNLYLKALHSNSTETVLENANAIFVS-NKLRLKKDYETNLRYV 493
           +   ++    K   ++  NLY++ L  N  E +LEN  + +      R+ +D +TN + V
Sbjct: 162 VNKGIQAQMAKQQEQDPTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGV 221

Query: 494 YFSEV 508
            F+ +
Sbjct: 222 GFARM 226


>SB_59431| Best HMM Match : Prefoldin (HMM E-Value=0.4)
          Length = 462

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 90  CSIMRVLICFVVAFASLQTLDCLDTRALYS 179
           C +  VL CF+VAF S +T+    T   YS
Sbjct: 218 CQVHHVLYCFIVAFGSQRTMIIDSTGWRYS 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,051,121
Number of Sequences: 59808
Number of extensions: 381410
Number of successful extensions: 990
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)