Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30745
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)                       31   0.74 
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 31   0.97 
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   30   1.3  
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 29   3.0  
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)                    28   5.2  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_37468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        28   6.9  
SB_303| Best HMM Match : SURF6 (HMM E-Value=5)                         27   9.1  
SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_5550| Best HMM Match : BofA (HMM E-Value=3.3)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -1

Query: 426 AFEFSFIFLCELVGGIVFGLQLLPEFGFVVDEVTNHLFG 310
           AF   F  +  LV G+VFGL   P FG V   V   +FG
Sbjct: 90  AFRLVFGLVLRLVFGLVFGLVFWPVFGLVFGLVFGLVFG 128


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +3

Query: 204 SKRANVPQKARELKSHIRKPSRPTALNAPKRKRGGNRKDDWSPHQPRSRILGGAEGQIRS 383
           S+R +  +     +SH RK SR ++  +  RK+ G+R +  S  + RSR    ++ + +S
Sbjct: 288 SQRKSRSRSRNRSRSHSRKRSRSSS-RSKSRKKSGSRSNSQSKQKSRSRSRSNSQSRKKS 346


>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 168  PSGSSFPTYIASSKRANVPQKARELKSHIRKPSRPTALNA 287
            P+  S P ++ SSK A+ P     L S +R+    T LNA
Sbjct: 949  PAPPSSPAFLQSSKGASAPITHESLSSKLRRALTATGLNA 988


>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 819

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
 Frame = +3

Query: 189 TYIASSKRANVPQKARELKSHIRKPSRPTALNAP-KRKRG---GNRK----DDWSPH 335
           T I +S      Q      SH R+P + T +NAP  R+ G   GN++     DWS H
Sbjct: 598 TXINASHSRETGQTTENNASHSREPGQTTEINAPHSRETGQNHGNQRFTLVGDWSDH 654


>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 340

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 221 TAEGKGT*ISHQEALETNCAKCTKAQKGWEPKR*LVTSSTTKPNSGRS*RPNTIPPTSSQ 400
           TA+G GT  S ++   +   K TK  K  +P +    + +TKP         T P  S++
Sbjct: 140 TAKGSGTPTSTKQPSSSRPFKSTKPTKSTKPTKSTKATKSTKPTKSTKPTKPTKPTKSTK 199


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 210  RANVPQKARELKSHIRKPSRPT--ALNAPKRKRGGNRKDDWSPHQPRSR 350
            ++ +P+   E +  I +PSRP+    + P R+R        +PH  R+R
Sbjct: 1803 KSRIPRPVAEPRRRISQPSRPSDDDFSPPVRRRAHTNAHKNNPHSLRAR 1851


>SB_37468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 469 SCNEIYVFS*FNFHSTHIFFSKCLRKYVIGYY 564
           SC   +++S F  H TH+F+   + K  IG Y
Sbjct: 129 SCQSSHLYSDFKLHFTHVFYPSLVPK--IGVY 158


>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +3

Query: 183  FPTYIASSKRANVPQKARELKSHIRKPSRPTALNAPKRKRGGNRKDDWSPHQPRSR 350
            F   I  +K ANV +     K  I+ P R  A   P     G   D  +P  PR R
Sbjct: 837  FHRNIMGAKGANVQEVTARHKVQIKFPDRSPAGEEPVVNGDGEHLDPEAPISPRKR 892


>SB_303| Best HMM Match : SURF6 (HMM E-Value=5)
          Length = 353

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 195 IASSKRANVPQKARELK-SHIRKPS-RPTALNAPKRKRGGNRKDDWSPHQPRSRILGGAE 368
           I +++R  + +K R  K  +  KPS R     AP  +   +++  WS  QP  +  G + 
Sbjct: 141 IRAAEREALREKTRANKHKYAEKPSGRGRGAFAPYNRPSFDQRAGWSGRQPSYQQYGSSF 200

Query: 369 GQIRSHQ 389
           GQ R ++
Sbjct: 201 GQQRPNE 207


>SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 195 IASSKRANVPQKARELK-SHIRKPS-RPTALNAPKRKRGGNRKDDWSPHQPRSRILGGAE 368
           I +++R  + +K R  K  +  KPS R     AP  +   +++  WS  QP  +  G + 
Sbjct: 187 IRAAEREALREKTRANKHKYAEKPSGRGRGAFAPYNRPSFDQRAGWSGRQPSYQQYGSSF 246

Query: 369 GQIRSHQ 389
           GQ R ++
Sbjct: 247 GQQRPNE 253


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
 Frame = +3

Query: 174 GSSFPTYIASSKRANVPQKA-RELKSHIRKPSRPTA-LNAPKRKRG---GNRKDDWSPHQ 338
           GS   + I + +RAN P  +    +     PS      ++P   RG   G      SPHQ
Sbjct: 675 GSRVNSPIGARRRANSPGPSINSPRGRAESPSNAHGRASSPSGTRGPVSGPSGARGSPHQ 734

Query: 339 PRSRIL--GGAEGQIRS 383
           PR R    GGA G+  S
Sbjct: 735 PRGRASSPGGARGRAAS 751


>SB_10203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1091

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 195  IASSKRANVPQKARELK-SHIRKPS-RPTALNAPKRKRGGNRKDDWSPHQPRSRILGGAE 368
            I +++R  + +K R  K  +  KPS R     AP  +   +++  WS  QP  +  G + 
Sbjct: 980  IRAAEREALREKTRANKHKYAEKPSGRGRGAFAPYNRPSFDQRAGWSGRQPSYQQYGSSF 1039

Query: 369  GQIRSHQ 389
            GQ R ++
Sbjct: 1040 GQQRPNE 1046


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,731,082
Number of Sequences: 59808
Number of extensions: 415639
Number of successful extensions: 1023
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)