Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30744
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48010| Best HMM Match : Fz (HMM E-Value=1.1e-15)                    29   5.2  
SB_36660| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_48010| Best HMM Match : Fz (HMM E-Value=1.1e-15)
          Length = 994

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 60  SPIQFRYERHYARTEKTLRH 119
           S ++F YE+HY+  E TL+H
Sbjct: 692 STVKFLYEKHYSIAEATLKH 711


>SB_36660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 677 YCVIVNYATGCDLP 718
           YCV+V+  TGCDLP
Sbjct: 267 YCVMVDAYTGCDLP 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,898,387
Number of Sequences: 59808
Number of extensions: 422021
Number of successful extensions: 856
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)