Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30744
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing ...    29   4.2  
At1g16760.1 68414.m02013 protein kinase family protein contains ...    29   4.2  
At5g65010.2 68418.m08178 asparagine synthetase 2 (ASN2) identica...    28   7.4  
At5g65010.1 68418.m08177 asparagine synthetase 2 (ASN2) identica...    28   7.4  
At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identica...    28   7.4  
At5g43180.1 68418.m05272 expressed protein contains Pfam profile...    27   9.8  
At3g02210.1 68416.m00202 phytochelatin synthetase family protein...    27   9.8  

>At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing
           protein 
          Length = 253

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 128 PLLVPKSFFSSGIMTFITKLDWRLAMTSLLGFFT*CLM 15
           P+L P+S  S+G+   +T+ D + +  SL G FT  L+
Sbjct: 113 PVLFPQSSISNGVTHTVTESDGKGSALSLCGSFTSTLL 150


>At1g16760.1 68414.m02013 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 758

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 196 RAPVTYTAVNALRNLILGFTARNRF 122
           +A V Y  V+A+ NL+LG  +RN F
Sbjct: 105 KAIVEYVTVSAIENLVLGAPSRNSF 129


>At5g65010.2 68418.m08178 asparagine synthetase 2 (ASN2) identical
           to asparagine synthetase (ASN2) [Arabidopsis thaliana]
           GI:3859536
          Length = 579

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 427 FKPKHITASRQK*AGRWYLPVW 362
           F P HI +S+Q    RWY P W
Sbjct: 174 FPPGHIYSSKQGGLRRWYNPPW 195


>At5g65010.1 68418.m08177 asparagine synthetase 2 (ASN2) identical
           to asparagine synthetase (ASN2) [Arabidopsis thaliana]
           GI:3859536
          Length = 578

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 427 FKPKHITASRQK*AGRWYLPVW 362
           F P HI +S+Q    RWY P W
Sbjct: 174 FPPGHIYSSKQGGLRRWYNPPW 195


>At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identical
           to asparagine synthetase (ASN3) [Arabidopsis thaliana]
           GI:3859534
          Length = 578

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 427 FKPKHITASRQK*AGRWYLPVW 362
           F P HI +S+Q    RWY P W
Sbjct: 174 FPPGHIYSSKQGGLRRWYNPPW 195


>At5g43180.1 68418.m05272 expressed protein contains Pfam profile
           PF04654: Protein of unknown function, DUF599
          Length = 239

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 179 YGSQCVKEFNIRFYSAQPLLVPKSFFSSGIMTFI 78
           +GSQ  K F +++ SA  LL    FFSS  ++++
Sbjct: 111 FGSQNAKIFVLKYASASLLLAASFFFSSIALSYL 144


>At3g02210.1 68416.m00202 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL3 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623);
           supported by cDNA: gi|26452134|dbj|AK118555.1; contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 452

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 599 RRLNRRTATWQSTC*NTTFLFDVTPFYCV 685
           RR+ +   TW  TC  + FL   TP  CV
Sbjct: 204 RRVTQALMTWNVTCTYSQFLAQKTPTCCV 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,035,109
Number of Sequences: 28952
Number of extensions: 293833
Number of successful extensions: 615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)