Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30742
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0280 + 22010270-22011407,22011890-22013097 32 0.51
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 31 1.2
12_02_0674 - 21745321-21746223,21746229-21747608 29 2.7
11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793... 29 2.7
02_03_0134 - 15596379-15597689 29 3.6
03_02_0243 - 6744164-6744415,6744518-6745135 29 4.7
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280 28 6.2
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355... 28 6.2
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 28 8.3
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 28 8.3
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 463 QEALHFVGLKISDVKATKWSHSLTISTSMPSTLSTSVKKNS 585
QE LH V K S WSH+++ TS+ ST S+++ +
Sbjct: 733 QEVLHSVSTKKSKELHVSWSHAISEGTSLDSTRQYSLEEEN 773
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 391 AFYQLYKRIVQYVIEFKQYQVPYTQEALHFVGLKISDVKATKWSHSLTISTSMPSTLSTS 570
A+ K ++ EF+ ++ P+ EA+H V L+I + A K L S P L ++
Sbjct: 91 AYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEIR-LLAEKADRELATSGKNPDKLQSA 149
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +3
Query: 3 LFELATSRL-STPFIIHLPK---EAMTTSCT-PRRTTKKFASSTFMRRHSSNTSSKVTSR 167
L +TS++ STP L + +T+CT P T SST S ++SK +S
Sbjct: 548 LLSSSTSKIPSTPSTCELSTATGKIPSTTCTSPLSTATGKTSSTPSTSPLSTSTSKTSST 607
Query: 168 PSTKKLICTVAKQSTLWATTGRRTP 242
PST L + K T T TP
Sbjct: 608 PSTSPLSSSTIKIPTTARTGELSTP 632
>11_04_0306 +
16176873-16177124,16178155-16179152,16179204-16179339,
16179448-16179597,16179711-16179891,16181139-16181298,
16182156-16182378
Length = 699
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 132 HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 248
H TS+ + PSTK L+C+ +Q+ L + R P+Y
Sbjct: 583 HLDTTSTSINLHPSTKLLLCS-QEQAGLKFSLSRACPLY 620
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +3
Query: 72 TSCTPRRTTKKFASSTFMRRHSSNTS----SKVTSRPSTKKLICTVAKQSTLWATTG 230
+S P T + SS M R + ++S S ++SRP K+ + AKQ T AT G
Sbjct: 113 SSVWPPALTARNRSSKDMNRTAKSSSAMQKSNLSSRPGVDKMAASSAKQRTQKATPG 169
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 689 DDGVSGNIRFNIDCHSERLVV 627
D VSG+ RF++ C ERLVV
Sbjct: 87 DVRVSGSARFDVQCRGERLVV 107
>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
Length = 422
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 87 RRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKRLPP 266
R K +RR SS S + R +L T AK TLW +G R + R PP
Sbjct: 16 RALLAKLTPLHLLRRGSSALSCFMLPRAILAELYVTGAKSLTLWLWSGIRI-LVPCRAPP 74
Query: 267 IL 272
++
Sbjct: 75 LM 76
>03_06_0354 -
33333634-33333840,33334106-33334213,33335384-33335557,
33335637-33335765,33335858-33336145,33336257-33336489,
33336607-33337435
Length = 655
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 644 SERLVV-KTWLTDLVTVRRVLEFFFTEVDSVEGIEVEMVKECDHF 513
+ER+ V KTW++ V+ FF ++S + + E+ KE + F
Sbjct: 423 AERMAVRKTWMSAAQKSSNVVARFFVALNSRKEVNAELKKEAEFF 467
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +3
Query: 36 PFIIHLPKEAMTTSCTPRR-TTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQST 212
P H P A TPRR T ASS R SS++SS S ++ T A +T
Sbjct: 20 PAAAHAPNSAAAACSTPRRGKTSPHASS---RHASSSSSSSSLPSCSAARVAVTPAPHAT 76
Query: 213 LWATTGRR 236
A R
Sbjct: 77 ATAPVTMR 84
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 56 QRSNDYELHTEKNYEEIRFLDIYEKTFFQYLQQGHFKAF 172
++S E T+KNYE I F D ++ QYL K F
Sbjct: 607 EKSPFLERLTKKNYEVIYFTDPVDEYLMQYLMDYEDKKF 645
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,876,672
Number of Sequences: 37544
Number of extensions: 358357
Number of successful extensions: 1013
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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