Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30742
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            32   0.39 
SB_5569| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.52 
SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               30   1.6  
SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)                       29   2.8  
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_13635| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)                 28   6.4  
SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   28   6.4  

>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +3

Query: 57   KEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRR 236
            KE+  +    RR  K+  S+  M R     S ++ +R   +KL   VA   T   T GR+
Sbjct: 1127 KESTRSRAENRRRAKEEMSA--MERELEEASEQIKAREQ-EKLNKHVASVRTKIVTPGRK 1183

Query: 237  TPIYSKRLP 263
            TP+  KR P
Sbjct: 1184 TPVTPKRTP 1192


>SB_5569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 333 VERLRSSTKYAASVNLVRTLVELEEVSSNRSAFV-CQ*LPTKLTALLLCRSIFLSKALK* 157
           +E+   S  +  S N +  LV+ + V +NR     CQ  P+ LT +L  R +  SK  + 
Sbjct: 567 IEQAHPSDVWVCSTNKMGALVQQQLVENNRKTTPDCQ-QPSALTPILASRIVIASKGGRC 625

Query: 156 PC 151
           PC
Sbjct: 626 PC 627


>SB_25448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +3

Query: 87  RRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKRLPP 266
           RR +K  A S+ M    S T++   S P   +     A +  LW T  RRT + S    P
Sbjct: 232 RRRSKALAPSSRMHAAHSMTAAGTASAPGPGEKSDHTALKFALWMTFERRTTVLSMGRSP 291

Query: 267 I 269
           I
Sbjct: 292 I 292


>SB_14410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +3

Query: 87  RRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKRLPP 266
           RR +K  A S+ M    S T++   S P   +     A +  LW T  RRT + S    P
Sbjct: 132 RRRSKALAPSSRMHAAHSMTAAGTASAPGPGEKSDHTALKFALWMTFERRTTVLSMGRSP 191

Query: 267 I 269
           I
Sbjct: 192 I 192


>SB_6363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
 Frame = +1

Query: 238 RRSIRRDFLQFYQRSYQVNARRVLGAAPKPFNQYTFIPSALDFYQTSARNPAFYQLYKR- 414
           R S++R+ L  Y+   Q  +R  L A    + QYT   + L + Q +     +   Y R 
Sbjct: 37  RYSLKRNALLAYR---QYTSRNTLLA----YRQYTSRNTLLAYTQYAIHYTQYATRYTRN 89

Query: 415 ----IVQYVIEFKQYQVPYTQEALHFVGLKISDVK 507
                 QY I + QY   YT+ ALH +   +  ++
Sbjct: 90  ALLAYTQYAINYTQYATCYTRNALHAIRFTLHAIR 124


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/63 (38%), Positives = 30/63 (47%)
 Frame = +3

Query: 18   TSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTV 197
            T R S     H  + + TT    RR   + AS T   R SSNT+ + T RPS K+L  T 
Sbjct: 1113 TGRSSNTTRSHTRRSSNTTRGHTRRQVTQLASHT---RRSSNTTRRHTRRPS-KQLAVTQ 1168

Query: 198  AKQ 206
              Q
Sbjct: 1169 GGQ 1171


>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 659

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 66  MTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLIC-TVAKQSTLWATTGRRTP 242
           +TTS  P+ ++  F +++   + ++   S + ++P T   IC T + Q    +  G  T 
Sbjct: 37  LTTSIQPQTSSPIFHTTSTRPQTTTTVGSTILTQPQTSSAICHTTSTQPHTSSAVGHTTS 96

Query: 243 IYSKRLPPILP 275
              ++  PI P
Sbjct: 97  TKPQKSSPIGP 107


>SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)
          Length = 1040

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +1

Query: 430 IEFKQYQVPYTQEALHFVGLKISDVKATKW------SHSLTISTSMPSTLSTSVK 576
           I F    +PY +E  +FV LK ++   ++W       HSL I T+ P  L   +K
Sbjct: 406 IGFVTVNLPYLKEKSYFVCLKATNSSRSQWVHQGSNGHSLEIGTAEPDPLPLWLK 460


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 69  TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKK 182
           TTS +P R  KK  SS   +R SS++SS    R + KK
Sbjct: 65  TTSSSPERNIKK-KSSKAPKRQSSSSSSSSPKRKTKKK 101


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
 Frame = +3

Query: 15  ATSRLSTPFIIHLPKEAMTTSCTPRR--TTKKFASSTFMRRHSSNTSSKVTSRPSTKKL- 185
           +T R  +      P  + T++ T R   T+     ST   R S  T+S +T+ PST  + 
Sbjct: 101 STPRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRTGSTITLRTS--TTSVMTTTPSTTSIS 158

Query: 186 ----ICTVAKQST--LWATTGRRTPIYSKRLPPILP 275
                 T +  ST  +  +TG   PI   +LPP +P
Sbjct: 159 RAGSTTTTSDPSTSNITTSTGTTNPIPVSQLPPQVP 194


>SB_13635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 114 STFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKRLPPILPAFLP 287
           +T   + SS   + +TS+P +  +    +K S+LW TT    P       P L AF P
Sbjct: 2   TTLTSKPSSLWVTTLTSKPFSLWVTTLTSKPSSLWVTTLTSKPSSLWVTSPDLQAFFP 59


>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 60  EAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRT 239
           E  TT  T   TT    ++T     +   ++  T  P+T   I T  ++ T   TT   T
Sbjct: 27  ETTTTKTTEEPTTITETTTTTEEPTTITETTTTTEEPTTITEITTTTEEPTTTTTTAAET 86

Query: 240 P 242
           P
Sbjct: 87  P 87


>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +3

Query: 81  TPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLI 188
           TPRR T++F+++T +   +SNT+ ++  + +  + I
Sbjct: 531 TPRRLTQRFSTATTLLAQTSNTTKELGKKYAKSRSI 566


>SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)
          Length = 892

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +1

Query: 397 YQLYKRIVQYVIEF--KQYQVPYTQEALHFVGLKISDVKATKWSHSLTISTSMPSTLSTS 570
           Y  +K ++  ++++  K   VPY   ALH    K +  + T  +HS T S +M ST +++
Sbjct: 620 YLKFKDLILRMLDYDRKTRIVPYA--ALHHCFFKKTAEEGTNTTHSATNSPAMGSTTNST 677

Query: 571 VKKNSRTL 594
               + T+
Sbjct: 678 TSTTNSTV 685


>SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 65  NDYELHTEKNYEEIRFLDIYEK 130
           +DYEL T  NYE +R ++ YE+
Sbjct: 2   HDYELCTTMNYERLRTMNDYER 23


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = +1

Query: 526 SLTISTSMPSTLSTSVKKNSRTLLTVTRSVNHVLTTSRSL 645
           ++TIST+  + ++ ++  N  T++T+T + N+  T + ++
Sbjct: 449 TITISTNYTTIVTITITTNYTTIVTITITTNYTTTVTTTI 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,558,281
Number of Sequences: 59808
Number of extensions: 401196
Number of successful extensions: 1307
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)