Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30742
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49060.1 68418.m06070 DNAJ heat shock N-terminal domain-conta... 33 0.18
At1g74800.1 68414.m08666 galactosyltransferase family protein co... 31 0.98
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 30 1.7
At5g01280.1 68418.m00037 expressed protein 29 2.3
At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS cla... 29 3.0
At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS cla... 29 3.0
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2... 29 3.9
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 29 3.9
At4g16563.1 68417.m02506 aspartyl protease family protein contai... 28 5.2
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf... 28 5.2
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 28 6.9
At2g47260.1 68415.m05901 WRKY family transcription factor contai... 28 6.9
At4g37190.1 68417.m05265 expressed protein 27 9.1
At2g31340.1 68415.m03825 expressed protein 27 9.1
At1g69230.2 68414.m07930 expressed protein 27 9.1
At1g69230.1 68414.m07929 expressed protein 27 9.1
>At5g49060.1 68418.m06070 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 354
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 498 RRQSDKMVTFFDHFD-FDAFNTVYFSKEELKNSPHGYKVRQPRLNHKPFTVTIDIKSDVA 674
RR + + F D FD + F TV+ + E+ + H Y+ RQPR + + + S +
Sbjct: 180 RRYNTRNDFFDDEFDPEEIFRTVFGQQREVFRASHAYRTRQPRNQFREEEINVAGPSCLT 239
Query: 675 TNAVVKMFL 701
++ FL
Sbjct: 240 IIQILPFFL 248
>At1g74800.1 68414.m08666 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 672
Score = 30.7 bits (66), Expect = 0.98
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -1
Query: 644 SERLVV-KTWLTD-LVTVRRVLEFFFTEVDSVEGIEVEMVKECDHF 513
SER+ V K+W+ L+T +V+ FF + + + VE+ KE ++F
Sbjct: 437 SERMAVRKSWMQHVLITSAKVVARFFVALHGRKEVNVELKKEAEYF 482
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 547 MPSTLSTSVKKNSRTLLTVTRSVNHVLTTSRSL*QSILNLMLPLTPSS 690
M S LS KKN + L +S+ H L TSRS ++ L+ ++P S
Sbjct: 1 MASILSKKQKKNEKYTLKELKSLGHDLLTSRSHINNLPLLLTFVSPES 48
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/79 (31%), Positives = 31/79 (39%)
Frame = +3
Query: 63 AMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTP 242
A +T+ T+ SST S++S TSR + T ST TTG T
Sbjct: 118 ATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARATRPTTSTDQQTTGSATS 177
Query: 243 IYSKRLPPILPAFLPG*RS 299
S P P PG RS
Sbjct: 178 TRSNNRPMSAPNSKPGSRS 196
>At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 371
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 158 HFKAFDKKIDLHSSKAVNFVG 220
H KA +KK+DL+S+K++ VG
Sbjct: 191 HMKALNKKLDLNSNKSLRVVG 211
>At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 275
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 158 HFKAFDKKIDLHSSKAVNFVG 220
H KA +KK+DL+S+K++ VG
Sbjct: 191 HMKALNKKLDLNSNKSLRVVG 211
>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
plant glutamate receptor family, PMID:11379626
Length = 940
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Frame = +2
Query: 155 GHFKAFDKKIDLHSSKAVNFVGN------YWQTNADLFEETSSNSTSV 280
G FK D ++ + +NFVGN +W L + TSSN ++
Sbjct: 375 GEFKLIDGQLQSPKFEIINFVGNEERIIGFWTPRDGLMDATSSNKKTL 422
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 135 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKRLPP 266
+S S + ++P KK+ +AK++ A +RTP+ SK PP
Sbjct: 833 ASGGKSGILNKPEIKKINQDLAKKTNAAANESQRTPVTSK--PP 874
>At4g16563.1 68417.m02506 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 499
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +3
Query: 6 FELATSRLSTPFIIHLPKEAMTT--SCTPRRTTKKFA--SSTFMRRHSSNTSSKVTSRP 170
F + S LSTP ++HL T+ S +P K + SS RRH + S P
Sbjct: 18 FHFSVSSLSTPLLLHLSHSLSTSKHSSSPLHLLKSSSSRSSARFRRHHHKQQQQQLSLP 76
>At3g27720.1 68416.m03461 zinc finger protein-related contains
Pfam:PF01485 IBR domain
Length = 493
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +1
Query: 226 LADERRSIRRDFLQFYQRSYQVNARRVLGAAPKPFNQY 339
++DE R+I+++ + Q+ + N R+ +PF++Y
Sbjct: 388 MSDEERNIKKNLFEDQQQQLEGNVERLSKILEEPFDEY 425
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 484 GLKISDVKATKWSHSLTISTSMPSTLSTSVKKNSRTLLTVTRSVN 618
G K + + + S+ + +MPS+ S+S K +LL RSVN
Sbjct: 50 GFKPASLLCSSGSNKILGKRAMPSSFSSSESKRQSSLLDHFRSVN 94
>At2g47260.1 68415.m05901 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 337
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 508 ATKWSHSLTISTSMPSTLSTSVKKNSRTLLTVTRSVNHVLTTSRSL*QSILNLMLPLTPS 687
AT HS + TS P T + K S +++ S V + SL L + P TP+
Sbjct: 48 ATVSPHSFLLQTSQPQTQTQPSAKLSSSIIQAPPSEQLVTSKVESLCSDHLLINPPATPN 107
Query: 688 S 690
S
Sbjct: 108 S 108
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 158 DLAGGIGRMSSHKCRGSEFLRSSSRCATRSHCFFGQMDNKRS 33
+L G +G MSS RG+ + SS + S +FG +D +RS
Sbjct: 71 NLKGALGTMSS---RGTLYNEGSSSRSDSSATWFGDVDTQRS 109
>At2g31340.1 68415.m03825 expressed protein
Length = 559
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/86 (20%), Positives = 38/86 (44%)
Frame = +1
Query: 223 LLADERRSIRRDFLQFYQRSYQVNARRVLGAAPKPFNQYTFIPSALDFYQTSARNPAFYQ 402
++AD + R + Y + + ++G+ F + + L + Q + NPA +
Sbjct: 356 IIADVLGANSRHLFELYALKQSNHYQSLMGSKAGTFED--IVDAYLAYLQVAVVNPAMDK 413
Query: 403 LYKRIVQYVIEFKQYQVPYTQEALHF 480
R+ +Y + ++ +PY E L F
Sbjct: 414 ALLRLQRYATDVRKGSIPY--EKLRF 437
>At1g69230.2 68414.m07930 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 108 ASSTFMRRHSSNTSSKVTSRPSTK 179
+++ +MR NT + +T RPSTK
Sbjct: 67 SANNYMRAEGQNTGNFITDRPSTK 90
>At1g69230.1 68414.m07929 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 108 ASSTFMRRHSSNTSSKVTSRPSTK 179
+++ +MR NT + +T RPSTK
Sbjct: 67 SANNYMRAEGQNTGNFITDRPSTK 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,967
Number of Sequences: 28952
Number of extensions: 291583
Number of successful extensions: 1014
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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