Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30741
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_5448| Best HMM Match : C1q (HMM E-Value=0.032) 28 7.0
SB_1062| Best HMM Match : Sushi (HMM E-Value=2.2) 28 7.0
SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_53800| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_33947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3) 28 7.0
SB_33180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_2851| Best HMM Match : RVT_1 (HMM E-Value=3.50325e-43) 28 7.0
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 27 9.2
SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 329 SYSL*GTMCRISCHRRRMFRLACGSDYVNSALDGRVRALVSLFSRRIKTLDLDI 168
SY L G + SC FR GS+Y+N + + R +S +S +T+D I
Sbjct: 218 SYMLKGVLVNQSCSDVPHFRYTAGSNYLNEMIKDK-RDSLSRWSTHSQTVDPSI 270
>SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 181 SIWISPCALVTNLPVIRK*LHRPISFCK 98
SIW+ +N PV+ L+RP S+CK
Sbjct: 318 SIWMEIYPFKSNRPVLFNGLYRPPSYCK 345
>SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)
Length = 524
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = -1
Query: 522 DWYLRPSKSLYSIMATMPSQSMDSPVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFSSNF 343
D L LYSI +P++ M PV SL L + ++++F+F S+W+ + S+
Sbjct: 443 DGSLDLGSGLYSIH-DVPNKDMTVPVS--VSLRLSQGQYLSVFVFTSRGSSWTLSNSTGL 499
Query: 342 ATNF 331
+ F
Sbjct: 500 SVVF 503
>SB_1062| Best HMM Match : Sushi (HMM E-Value=2.2)
Length = 100
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 305 CRISCHRRRMFRLACGSDYVNSALDGR 225
CR+SC+ F DY+ S LDG+
Sbjct: 55 CRVSCNLYYDFEFLAAPDYICSDLDGK 81
>SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 181 SIWISPCALVTNLPVIRK*LHRPISFCK 98
SIW+ +N PV+ L+RP S+CK
Sbjct: 255 SIWMEIYPFKSNRPVLFNGLYRPPSYCK 282
>SB_53800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 181 SIWISPCALVTNLPVIRK*LHRPISFCK 98
SIW+ +N PV+ L+RP S+CK
Sbjct: 83 SIWMEIYPFKSNRPVLFNGLYRPPSYCK 110
>SB_33947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3)
Length = 338
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 181 SIWISPCALVTNLPVIRK*LHRPISFCK 98
SIW+ +N PV+ L+RP S+CK
Sbjct: 255 SIWMEIYPFKSNRPVLFNGLYRPPSYCK 282
>SB_33180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 181 SIWISPCALVTNLPVIRK*LHRPISFCK 98
SIW+ +N PV+ L+RP S+CK
Sbjct: 83 SIWMEIYPFKSNRPVLFNGLYRPPSYCK 110
>SB_2851| Best HMM Match : RVT_1 (HMM E-Value=3.50325e-43)
Length = 890
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 181 SIWISPCALVTNLPVIRK*LHRPISFCK 98
SIW+ +N PV+ L+RP S+CK
Sbjct: 22 SIWMEIYPFKSNRPVLFNGLYRPPSYCK 49
>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
Length = 592
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 527 IMIGICDHQSLYIPSWQPCHHNPWTPQ*RTEV 432
IMI + D + L P CHH+P T R +
Sbjct: 372 IMIMVIDSRYLLFPGLPECHHSPATTNMRRAI 403
>SB_23747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +2
Query: 260 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 439
H+LVE +++ ++ +D LVA Q VF+ + N V K G K
Sbjct: 734 HKLVEKRLVSNQQQRSIRFRDQRPHLVA--------QGVVFEPDANDVSK---GTLKVTG 782
Query: 440 FFTGESMDCDGMVAMMEYRDF 502
F G+++ + +V + Y DF
Sbjct: 783 FVRGQTLSANRLVHLAGYGDF 803
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,852,073
Number of Sequences: 59808
Number of extensions: 343035
Number of successful extensions: 779
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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