Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30741
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05540.1 68416.m00607 translationally controlled tumor family...    52   2e-07
At3g16640.1 68416.m02127 translationally controlled tumor family...    50   1e-06
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    31   0.46 
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   0.61 
At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)...    27   7.5  
At4g16150.1 68417.m02450 calmodulin-binding protein similar to a...    27   10.0 

>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
 Frame = +2

Query: 263 RLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQF 442
           RL E  +F DKK + +++K Y+K+L  KL+    +  E+FK ++    K ++ + K+ QF
Sbjct: 62  RLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESATKFLMSKLKDFQF 117

Query: 443 FTGESMDC-DGMVAMMEYRD 499
           F GESM+  +G +    YR+
Sbjct: 118 FVGESMEGEEGSLVFAYYRE 137



 Score = 31.9 bits (69), Expect = 0.35
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 49  MKIYKDIITGDEMFSDTYKMKLVD 120
           M +Y+DI+TGDE+ SD++  K ++
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIE 24



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 174 QIEGFNPSAEEA--DEGTDSAVESGVDIV*T 260
           ++EG NPS EE   DEG D      VDI+ T
Sbjct: 30  EVEGKNPSGEEGGEDEGVDDQAVKVVDIIDT 60


>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 27/70 (38%), Positives = 37/70 (52%)
 Frame = +2

Query: 290 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 469
           DKK +  Y+K Y+K L  KL E+  DQ  VFK  +    K +L R  + QFF GE M  D
Sbjct: 83  DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDD 139

Query: 470 GMVAMMEYRD 499
             +    Y++
Sbjct: 140 STLVFAYYKE 149



 Score = 33.9 bits (74), Expect = 0.087
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 141 GRLVTRAQGDIQIEGFNPSAEEA--DEGTDSAVESGVDIV*T 260
           G+ VT    D+ I G NPSAEE   DEG D + +  VDIV T
Sbjct: 33  GKWVTVGAVDVNI-GANPSAEEGGEDEGVDDSTQKVVDIVDT 73



 Score = 31.9 bits (69), Expect = 0.35
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 49  MKIYKDIITGDEMFSDTYKMKLVDE-VIYE*PVGW 150
           M +Y+D++TGDE+ SD++  K ++  +++E    W
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKW 35


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 129 LRMTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG 242
           L  +G  +T  +G+   EGF P+AEEAD+G  S +  G
Sbjct: 258 LTRSGAFITIGEGE---EGFLPTAEEADDGIGSMMMGG 292


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 320 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 463
           D M+  + KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 226 DKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At5g49030.1 68418.m06067 tRNA synthetase class I (I, L, M and V)
           family protein similar to SP|P41972 Isoleucyl-tRNA
           synthetase (EC 6.1.1.5) (Isoleucine--tRNA ligase)
           (IleRS) {Staphylococcus aureus}; contains Pfam profile
           PF00133: tRNA synthetases class I (I, L, M and V)
          Length = 1093

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 392 MNKVMKDILGRFKELQFFTGE---SMDCDGM 475
           +NK++KDI+ R+K LQ +  +     DC G+
Sbjct: 167 LNKILKDIINRYKLLQNYKVQYVPGWDCHGL 197


>At4g16150.1 68417.m02450 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 906

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 531 FQTWSRRREILNVR 572
           FQTW  RRE LN+R
Sbjct: 770 FQTWKMRREFLNMR 783


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,782,311
Number of Sequences: 28952
Number of extensions: 249359
Number of successful extensions: 678
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)