Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30740X
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_9086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_19899| Best HMM Match : rve (HMM E-Value=3.9e-22) 29 3.2
SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21) 29 3.2
SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22) 29 3.2
SB_10233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_49811| Best HMM Match : rve (HMM E-Value=4.4e-22) 29 3.2
SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22) 29 3.2
SB_35274| Best HMM Match : rve (HMM E-Value=7.2e-21) 29 3.2
SB_33415| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_4955| Best HMM Match : rve (HMM E-Value=7.5e-09) 29 3.2
SB_31728| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00016) 28 5.6
SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_6403| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 27 9.8
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 31.1 bits (67), Expect = 0.60
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 311 PLSRCPLGKDCLDNIHFRSQPCKSKVQRIDPW*ACQSKRILQCY 442
P C LG DC + +PCK V ++ P CQ ++ + C+
Sbjct: 1789 PKKLCDLGHDCPRRCFQKCEPCKVLVAKVIP--KCQHEQQIPCH 1830
>SB_9086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 332
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 31 VVDIERHLNNRPLTYVESDIGEDHVLTPNI 60
>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 1158 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 1187
>SB_19899| Best HMM Match : rve (HMM E-Value=3.9e-22)
Length = 574
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 385 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 414
>SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21)
Length = 620
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 428 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 457
>SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22)
Length = 1072
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 987 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 1016
>SB_10233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 31 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 60
>SB_49811| Best HMM Match : rve (HMM E-Value=4.4e-22)
Length = 664
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 475 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 504
>SB_37480| Best HMM Match : rve (HMM E-Value=4.7e-22)
Length = 900
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 288 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 317
>SB_35274| Best HMM Match : rve (HMM E-Value=7.2e-21)
Length = 803
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 718 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 747
>SB_33415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 31 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 60
>SB_4955| Best HMM Match : rve (HMM E-Value=7.5e-09)
Length = 667
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 438 VIDIGRVINNITVVKQQTDASNEHTLTPKI 527
V+DI R +NN + ++D +H LTP I
Sbjct: 478 VVDIERHLNNRPLTYVESDNGEDHVLTPNI 507
>SB_31728| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00016)
Length = 277
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 170 RAFIGQWKARGPRVL*YSYIYKADQIIINV 81
RA IG WKA GPR++ S+ K +I +++
Sbjct: 103 RALIG-WKAHGPRIMTASFYTKKKRINMDI 131
>SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 403 WI-NPLYLGLARLRPKMNIVKAVFT*RAPG 317
WI NP+Y G++R+R IV+ + PG
Sbjct: 994 WITNPVYTGISRVRHADQIVRVISPDNTPG 1023
>SB_6403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 274 LTICKRMIMNCTISQLITIRYHLSI*QKSGCPVDLGPLSANGRQGAP 134
+T C++M NC + + Y+ +I + + LS +GR G P
Sbjct: 4 ITFCRQM-ENCNVKDMFCHNYYSNILPEQSSELLADSLSRDGRHGNP 49
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 494 IGLLFDHCDIVDYSTDIYNIEEYA*IDMPTMDQSFVPWTC 375
I L+ C + D ++ + ID+P Q+F+P C
Sbjct: 438 IPLVSSKCRSLSVEDDATPVDAFCTIDLPARHQAFIPLRC 477
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,230,179
Number of Sequences: 59808
Number of extensions: 311383
Number of successful extensions: 640
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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