Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30740X
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81064-7|CAB02960.2|  382|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z54235-5|CAA90976.2|  202|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL031621-7|CAE46665.1|  382|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protei...    27   8.6  

>Z81064-7|CAB02960.2|  382|Caenorhabditis elegans Hypothetical
           protein F16B12.8 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +2

Query: 176 NGAPRFLLNTQMITDCYQLGNGAVHYHPFAYC**KAFPHFIVMEAPLSRCPLGKDCLDN- 352
           N   +++ N      C +  +G  HY  F+ C  K F   +++E    +C   K C +N 
Sbjct: 11  NSEHKYVKNQGTCMICPKKASGR-HYGVFSCCACKMFFRRVIVENLFYKCKQNKTCYENE 69

Query: 353 -IHFRSQPCKSKVQR 394
            I  R +P K +  R
Sbjct: 70  IITGRQKPPKCQACR 84


>Z54235-5|CAA90976.2|  202|Caenorhabditis elegans Hypothetical
           protein C09G9.7 protein.
          Length = 202

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 164 RPEINGAPRFLLNTQMITDCYQLGNGAVH 250
           RP I+G P    + Q I +CY+ G   +H
Sbjct: 84  RPYISGRPLLTCDRQKIVECYKKGMKKIH 112


>U64601-8|AAB04576.2|  413|Caenorhabditis elegans Hypothetical
           protein M03F4.6 protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 299 VMEAPLSRCPLGKDCLDNIHFRSQPCKSKVQRIDPW*AC 415
           V+  P+ +   G +C    H++ QPC+   Q +DP+ AC
Sbjct: 110 VVLCPVGQQLYGVECTRVAHYQ-QPCEKDSQCVDPFNAC 147


>AL031621-7|CAE46665.1|  382|Caenorhabditis elegans Hypothetical
           protein F16B12.8 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +2

Query: 176 NGAPRFLLNTQMITDCYQLGNGAVHYHPFAYC**KAFPHFIVMEAPLSRCPLGKDCLDN- 352
           N   +++ N      C +  +G  HY  F+ C  K F   +++E    +C   K C +N 
Sbjct: 11  NSEHKYVKNQGTCMICPKKASGR-HYGVFSCCACKMFFRRVIVENLFYKCKQNKTCYENE 69

Query: 353 -IHFRSQPCKSKVQR 394
            I  R +P K +  R
Sbjct: 70  IITGRQKPPKCQACR 84


>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical protein
            E03G2.2 protein.
          Length = 1503

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 342  ALTIFILGRNRASPR-YKGLIHGRHVNLSVFFNVIDIGRVINNI 470
            +L + ++G   AS   +K L+H    N   +F++  IGR+IN +
Sbjct: 1004 SLVLLLIGGVAASKNLHKPLLHNVLRNPLSYFDITPIGRIINRL 1047


>U53333-6|AAA96159.2|  304|Caenorhabditis elegans Collagen protein
           33 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -2

Query: 193 KSGCPVDLGPLSANGRQG-APEYCNI 119
           K G P   GP  A G +G  P+YC I
Sbjct: 267 KPGAPGQAGPAGAKGEKGICPKYCAI 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,344,505
Number of Sequences: 27780
Number of extensions: 242204
Number of successful extensions: 453
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)