Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30740X
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59780.3 68418.m07494 myb family transcription factor (MYB59)...    29   2.0  
At5g59780.2 68418.m07493 myb family transcription factor (MYB59)...    29   2.0  
At5g59780.1 68418.m07492 myb family transcription factor (MYB59)...    29   2.0  
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-...    27   6.1  
At1g19170.1 68414.m02386 glycoside hydrolase family 28 protein /...    27   8.0  

>At5g59780.3 68418.m07494 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 235

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 359 NEYCQGSLYLEGTGIMGPP*L*NEGKL-FINNMQKDDNELHHFPIDNNPLSFEY 201
           N Y + S YL    +  P     E  L  I NM  D++++  F ID  PLSFE+
Sbjct: 180 NYYSEQSCYLNFPPLASPTW---ESSLESIWNMDADESKMSSFAIDQFPLSFEH 230


>At5g59780.2 68418.m07493 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 214

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 359 NEYCQGSLYLEGTGIMGPP*L*NEGKL-FINNMQKDDNELHHFPIDNNPLSFEY 201
           N Y + S YL    +  P     E  L  I NM  D++++  F ID  PLSFE+
Sbjct: 159 NYYSEQSCYLNFPPLASPTW---ESSLESIWNMDADESKMSSFAIDQFPLSFEH 209


>At5g59780.1 68418.m07492 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 170

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 359 NEYCQGSLYLEGTGIMGPP*L*NEGKL-FINNMQKDDNELHHFPIDNNPLSFEY 201
           N Y + S YL    +  P     E  L  I NM  D++++  F ID  PLSFE+
Sbjct: 115 NYYSEQSCYLNFPPLASPTW---ESSLESIWNMDADESKMSSFAIDQFPLSFEH 165


>At5g53430.1 68418.m06640 PHD finger family protein / SET
           domain-containing protein (TX5) contains Pfam domain,
           PF00628: PHD-finger and PF00856: SET domain; identical
           to cDNA  trithorax 5 (TX5) partial cds GI:16118406
          Length = 1043

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 277 LLTICKRMIMNCTISQLITIRYHLSI*QKSGCPVDLGPLSANGRQ 143
           +  ICK++  +CT     +  YH     ++G  ++L  L  NGRQ
Sbjct: 720 ICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGRQ 764


>At1g19170.1 68414.m02386 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein low
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 506

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 363 GRNRASPRYKGLIHGRHV 416
           GR R  PRY  LIHG+++
Sbjct: 174 GRERPGPRYGSLIHGQNL 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,559,175
Number of Sequences: 28952
Number of extensions: 216064
Number of successful extensions: 384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)