Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30739
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   28   3.2  
SB_7882| Best HMM Match : DUF548 (HMM E-Value=3.3)                     28   3.2  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         27   9.7  
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 198  EASQTLASARNLYQTSGRGRERRDNYVPEVSALEHDIIEVDPDT 329
            +    +AS +N ++T+ RGR      V +  + E DI   DP+T
Sbjct: 1411 DGKDNIASKQNSHRTTTRGRAGWGRPVAQAQSTEEDIAGSDPET 1454


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 365 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 261
           N+   ++ +H++  G    D M E++HF  W++V  P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397


>SB_7882| Best HMM Match : DUF548 (HMM E-Value=3.3)
          Length = 428

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 203 VSDTR--KCEESLSNFRKRT*EA*QLCPRSVC 292
           V+D R  +CE  LS+ RKRT  A +L P  VC
Sbjct: 395 VTDLRIARCEARLSHLRKRTQRARRLPPLHVC 426


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 82  YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 171
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 279 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 374
           PE+S + H I    PD +D   +L+F+NI G+
Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 104 ILIQIKEYVKKSLSFLPSLLGIKLLDL 184
           +L  I+E  K  L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,901
Number of Sequences: 59808
Number of extensions: 219640
Number of successful extensions: 495
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)