Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30739
(457 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 99 2e-21
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 99 2e-21
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 99 2e-21
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 99 2e-21
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 99 2e-21
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 2.0
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 2.0
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi... 29 2.0
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 7.9
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 98.7 bits (235), Expect = 2e-21
Identities = 44/61 (72%), Positives = 55/61 (90%)
Frame = +1
Query: 73 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 252
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 253 D 255
+
Sbjct: 77 E 77
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 255 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 389
RERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P
Sbjct: 78 RERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 98.7 bits (235), Expect = 2e-21
Identities = 44/61 (72%), Positives = 55/61 (90%)
Frame = +1
Query: 73 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 252
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 253 D 255
+
Sbjct: 77 E 77
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 255 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 389
RERR ++VP+ SA++ D I+VD +T +ML L ++ G+ +P
Sbjct: 78 RERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 98.7 bits (235), Expect = 2e-21
Identities = 44/61 (72%), Positives = 55/61 (90%)
Frame = +1
Query: 73 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 252
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 253 D 255
+
Sbjct: 77 E 77
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/40 (42%), Positives = 29/40 (72%)
Frame = +3
Query: 255 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 374
RERR ++VP+ SA++ D ++VD +T +ML L ++I G+
Sbjct: 78 RERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGI 117
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 98.7 bits (235), Expect = 2e-21
Identities = 44/61 (72%), Positives = 55/61 (90%)
Frame = +1
Query: 73 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 252
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 253 D 255
+
Sbjct: 77 E 77
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +3
Query: 255 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 389
RERR ++VP+ SA++ D I+VD +T +ML L ++ +G+ +P
Sbjct: 78 RERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEP 122
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 98.7 bits (235), Expect = 2e-21
Identities = 44/61 (72%), Positives = 55/61 (90%)
Frame = +1
Query: 73 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 252
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEE 76
Query: 253 D 255
+
Sbjct: 77 E 77
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +3
Query: 255 RERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 389
RERR ++VP+ SA++ D I+VD +T +ML L ++ G+ P
Sbjct: 78 RERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 388 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 281
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 388 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 281
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 790
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 186 HTF--NEASQTLASARNLYQTSGRGRERRDNYVPEVSALEHDIIEVDPDTKDML 341
HTF ++ S A A +Y RR YVP+ S + HD +E D +DML
Sbjct: 667 HTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 86 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 178
+ D +L +IK V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,756,606
Number of Sequences: 28952
Number of extensions: 160436
Number of successful extensions: 492
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -