Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30738
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 84 7e-17
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 76 3e-14
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 75 6e-14
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 74 1e-13
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 65 4e-11
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 60 1e-09
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 55 5e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 6e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 6e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 6e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 6e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 6e-07
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 8e-06
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 1e-05
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 46 2e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 40 0.001
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 36 0.020
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 36 0.020
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 36 0.026
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 36 0.026
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.060
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 35 0.060
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 34 0.10
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.18
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.24
At3g31950.1 68416.m04046 hypothetical protein 33 0.24
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.32
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 32 0.42
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.56
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.56
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 31 0.56
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.56
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.56
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.56
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.56
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 0.98
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 31 0.98
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.3
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 30 1.3
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.7
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.3
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.3
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.3
At4g19130.1 68417.m02823 replication protein-related similar to ... 29 2.3
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.3
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 29 2.3
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 29 2.3
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 29 2.3
At5g61670.2 68418.m07738 expressed protein 29 3.0
At5g61670.1 68418.m07737 expressed protein 29 3.0
At5g47430.1 68418.m05844 expressed protein 29 3.0
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 3.0
At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS cla... 29 3.0
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.0
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 29 3.9
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 3.9
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 3.9
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 3.9
At1g22690.1 68414.m02835 gibberellin-responsive protein, putativ... 29 3.9
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 28 5.2
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 28 5.2
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.2
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.2
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.2
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 28 5.2
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 5.2
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 28 6.9
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 28 6.9
At3g20150.1 68416.m02554 kinesin motor family protein contains P... 28 6.9
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 6.9
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si... 28 6.9
At5g05987.1 68418.m00663 prenylated rab acceptor (PRA1) family p... 27 9.1
At4g38350.1 68417.m05422 patched family protein similar to SP|O1... 27 9.1
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 27 9.1
At4g06479.1 68417.m00885 hypothetical protein 27 9.1
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 84.2 bits (199), Expect = 7e-17
Identities = 40/97 (41%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEE------------ADRCYRCNGTGHIARDCAQSPDEPS--CYNC 144
C+ C GHFARDC ++ + CY C G GHIARDCA + +PS CY C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQC 258
Query: 145 NKTGHIARNCPEGGRESA--TQTCYNCNKSGHISRNC 249
+GH+AR+C + G CY C K GH +R C
Sbjct: 259 GGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 71.3 bits (167), Expect = 6e-13
Identities = 42/114 (36%), Positives = 50/114 (43%), Gaps = 31/114 (27%)
Frame = +1
Query: 1 EKCFKCNRTGHFARDC------------KEEADRCYRCNGTGHIARDCAQSP-------- 120
E C+ C TGHFARDC K D CY C GH+ARDC Q
Sbjct: 132 EGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRG 191
Query: 121 ----DEPSCYNCNKTGHIARNCPE----GGRES---ATQTCYNCNKSGHISRNC 249
CY C GH AR+C + G S + TCY+C GHI+R+C
Sbjct: 192 AVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 245
Score = 70.5 bits (165), Expect = 1e-12
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 24/107 (22%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEA--------------DRCYRCNGTGHIARDCAQSP-------- 120
C+ C GH ARDC +++ D CY C GH ARDC Q
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 121 --DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPE 255
+CY+C GHIAR+C + ++ CY C SGH++R+C +
Sbjct: 226 GGGSGTCYSCGGVGHIARDCAT--KRQPSRGCYQCGGSGHLARDCDQ 270
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 31/114 (27%)
Frame = +1
Query: 7 CFKCNRTGHFARDCK--------EEADR----CYRCNGTGHIARDCAQSPD--------- 123
C+ C GH ++DC E R CY C TGH ARDC + +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 124 -EPSCYNCNKTGHIARNCPE---------GGRESATQTCYNCNKSGHISRNCPE 255
CY C GH+AR+C + G + CY C GH +R+C +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQ 215
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEA-------DRCYRCNGTGHIARDCA 111
C++C +GH ARDC + + CY+C GH AR+C+
Sbjct: 255 CYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEA 60
C+KC + GHFAR+C A
Sbjct: 282 CYKCGKEGHFARECSSVA 299
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 249 SRGTKTCYVCGKPGHISREYDDARN 323
SRG + CY CG GH +R+ A N
Sbjct: 128 SRGGEGCYNCGDTGHFARDCTSAGN 152
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 255 GTKTCYVCGKPGHISRE 305
G+ TCY CG GHI+R+
Sbjct: 228 GSGTCYSCGGVGHIARD 244
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 267 CYVCGKPGHISRE 305
CY CGK GH +RE
Sbjct: 282 CYKCGKEGHFARE 294
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/81 (43%), Positives = 43/81 (53%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGG 186
C C R GHFARDC C C GHIA +C E C+NC + GH+A NC G
Sbjct: 57 CNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG 112
Query: 187 RESATQTCYNCNKSGHISRNC 249
C++C KSGH +R+C
Sbjct: 113 ------ICHSCGKSGHRARDC 127
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARDCAQSPDEPS----CYNCNKTGHIARN 171
+C+ C GH A +C E C+ C +GH ARDC+ S C NC K GH+A +
Sbjct: 94 RCWNCREPGHVASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAAD 152
Query: 172 CPEGGRESATQTCYNCNKSGHISRNC 249
C + C NC SGHI+R+C
Sbjct: 153 CTND------KACKNCRTSGHIARDC 172
Score = 68.1 bits (159), Expect = 5e-12
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADR------CYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIAR 168
C C ++GH ARDC R C C GH+A DC ++ +C NC +GHIAR
Sbjct: 114 CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIAR 170
Query: 169 NCPEGGRESATQTCYNCNKSGHISRNCPE 255
+C C C+ SGH++R+CP+
Sbjct: 171 DCRND------PVCNICSISGHVARHCPK 193
Score = 62.1 bits (144), Expect = 3e-10
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEG 183
C C + GH A DC + C C +GHIARDC ++P C C+ +GH+AR+CP+G
Sbjct: 140 CNNCFKQGHLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKG 194
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +1
Query: 55 EADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 234
+ + C C GH ARDC+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 235 ISRNC 249
++ NC
Sbjct: 104 VASNC 108
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 74.5 bits (175), Expect = 6e-14
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 19/100 (19%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEA--------DRCYRCNGTGHIARDCAQSPDEP------SCYNC 144
C+ C GHFARDC++ CY C G GHIA+ C +CY C
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYEC 257
Query: 145 NKTGHIARNCPEGGRESA-----TQTCYNCNKSGHISRNC 249
TGH+AR+C G S+ + C+ C K GH +R C
Sbjct: 258 GGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 70.5 bits (165), Expect = 1e-12
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 25/106 (23%)
Frame = +1
Query: 7 CFKCNRTGHFARDCK---------------EEADRCYRCNGTGHIARDCAQS------PD 123
C+ C GH A+DC+ D CY C G GH ARDC Q+
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 124 EPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHISRNC 249
+CY C GHIA+ C P GG + CY C +GH++R+C
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRACYECGGTGHLARDC 267
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 27/109 (24%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEAD-----------RCYRCNGTGHIARDC-------------A 111
+C+ C GHFARDC++ CY C GH+A+DC
Sbjct: 131 ECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 112 QSPDEPSCYNCNKTGHIARNCPEGGRES---ATQTCYNCNKSGHISRNC 249
+ CY C GH AR+C + G + TCY C GHI++ C
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVC 239
Score = 61.3 bits (142), Expect = 6e-10
Identities = 38/116 (32%), Positives = 47/116 (40%), Gaps = 35/116 (30%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEAD----------------RCYRCNGTGHIARDCAQSPDEPS-- 132
CF C GH A+DC + CY C GH ARDC QS S
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 133 -------CYNCNKTGHIARNC----------PEGGRESATQTCYNCNKSGHISRNC 249
CY+C + GH+A++C GGR S CY C GH +R+C
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Frame = +1
Query: 130 SCYNCNKTGHIARNCP----------EGGRESATQ-TCYNCNKSGHISRNC 249
+C+NC + GH+A++C GGR S + CY C GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDC 145
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEA 60
KCF C + GHFAR+C A
Sbjct: 283 KCFICGKEGHFARECTSVA 301
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 255 GTKTCYVCGKPGHISRE 305
G+ C++CGK GH +RE
Sbjct: 280 GSNKCFICGKEGHFARE 296
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 255 GTKTCYVCGKPGHISREYD 311
G + CY CG GH++R+ D
Sbjct: 250 GGRACYECGGTGHLARDCD 268
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Frame = +1
Query: 1 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARDCAQSPDEPS----CYNCNKT 153
E CF C+ H A+ C E+++ C +C GH ++C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 154 GHIARNCPEGGRESATQ--TCYNCNKSGHISRNCPE 255
GH +CP + T+ +C+ C GHIS+NCPE
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPE 169
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = +1
Query: 79 NGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPE 255
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCPE
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPE 116
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARDCAQS-----PDEPSCYNCNK 150
C+ C TGH C + C+ C G GHI+++C ++ P C C
Sbjct: 127 CYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGS 186
Query: 151 TGHIARNCPEGGRESATQ 204
H+ ++CP+ + + Q
Sbjct: 187 VAHLVKDCPDKFNQESAQ 204
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 65.3 bits (152), Expect = 4e-11
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 36/117 (30%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADR-----------CYRCNGTGHIARDC-AQSPD---EP---- 129
C+KC + GH+ARDC ++D C++C GH +RDC AQS + EP
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 130 ------SCYNCNKTGHIARNCP--------EGGR---ESATQTCYNCNKSGHISRNC 249
CY C K GH +R+C + G+ S+T CY C K+GH SR+C
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDC 355
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEG 183
+C+KC + GH++RDC ++ +G A+ + + D CY C K GH +R+C
Sbjct: 305 ECYKCGKQGHWSRDCTGQSSNQQFQSGQ---AKSTSSTGD---CYKCGKAGHWSRDCTSP 358
Query: 184 GRESAT 201
+ + T
Sbjct: 359 AQTTNT 364
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 219 QQVRPHLPQLSRGTKTCYVCGKPGHISRE 305
QQ + + + T CY CGK GH SR+
Sbjct: 326 QQFQSGQAKSTSSTGDCYKCGKAGHWSRD 354
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 267 CYVCGKPGHISRE 305
C+ CGKPGH SR+
Sbjct: 270 CFKCGKPGHWSRD 282
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEG- 183
C++C + GH C + N + R S + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNE-NDSATPER-LFNSREASECYRCGEEGHFARECPNSS 344
Query: 184 ------GRESATQTCYNCNKSGHISRNCP 252
GRES T CY CN SGH +R CP
Sbjct: 345 SISTSHGRESQT-LCYRCNGSGHFARECP 372
Score = 57.6 bits (133), Expect = 7e-09
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCP 177
C+ C GH + +C R C+ C H A+ C++ D CY C KTGH A++CP
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCP 224
Query: 178 EGGRE-SATQTCYNCNKSGH 234
+ + S C C GH
Sbjct: 225 DKYKNGSKGAVCLRCGDFGH 244
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +1
Query: 55 EADRCYRCNGTGHIARDCAQS---------PDEPSCYNCNKTGHIARNCPEGGRES 195
EA CYRC GH AR+C S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 11/49 (22%)
Frame = +1
Query: 4 KCFKCNRTGHFARDC-----------KEEADRCYRCNGTGHIARDCAQS 117
+C++C GHFAR+C +E CYRCNG+GH AR+C S
Sbjct: 326 ECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADR------CYRCNGTGHIARDCA-----QSPDEPSCYNCNKT 153
C+ C +TGH A+DC ++ C RC GH C + + CY C
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSF 269
Query: 154 GHIARNCPEGGRE-SATQTCYNCNKSGHISRNC 249
GH+ C E G S +CY C + GH C
Sbjct: 270 GHLC--CVEPGNSLSWAVSCYRCGQLGHSGLAC 300
Score = 43.6 bits (98), Expect = 1e-04
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 27/109 (24%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADR-------CYRCNGTGHIARDCAQSPDEP-----SCYNCNK 150
C +C GH CK E + CY C GH+ C P SCY C +
Sbjct: 236 CLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHL---CCVEPGNSLSWAVSCYRCGQ 292
Query: 151 TGHIARNC-----PEGGRESAT----------QTCYNCNKSGHISRNCP 252
GH C +SAT CY C + GH +R CP
Sbjct: 293 LGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECP 341
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 17/59 (28%)
Frame = +1
Query: 130 SCYNCNKTGHIARNCP----------------EGGRE-SATQTCYNCNKSGHISRNCPE 255
SCY+C + GH + NCP G ++ S CY C K+GH +++CP+
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCPD 225
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 249 SRGTKTCYVCGKPGHISRE 305
SR CY CG+ GH +RE
Sbjct: 321 SREASECYRCGEEGHFARE 339
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Frame = +1
Query: 1 EKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARDCAQSPDEP-----SCYNC 144
E C +C GH CK E +CY CN GH+ C P SCY C
Sbjct: 26 EVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCYRC 82
Query: 145 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 249
+ GH C +S + +C+ C + GH C
Sbjct: 83 GQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +1
Query: 52 EEADRCYRCNGTGHIARDCA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 213
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 214 NCNKSGHISRNC 249
C + GH C
Sbjct: 81 RCGQLGHTGLAC 92
Score = 37.5 bits (83), Expect = 0.009
Identities = 31/111 (27%), Positives = 38/111 (34%), Gaps = 29/111 (26%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADRCY-------RCNGT----------------GHIARDCAQS 117
CF C R GHF C C+ C G GH C
Sbjct: 104 CFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTREEEEGHFEHQC--- 160
Query: 118 PDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNCP 252
PD S C+ + G I+ N +T CY C GHI+R+CP
Sbjct: 161 PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCP 211
Score = 34.7 bits (76), Expect = 0.060
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 49 KEEADRCYRCNGTGHIARDCAQS 117
+E CY C G GHIARDC S
Sbjct: 191 RETRRLCYECKGKGHIARDCPNS 213
Score = 34.3 bits (75), Expect = 0.079
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Frame = +1
Query: 28 GHFARDCKEEADRCYR--CNGTGHIARDCAQSPDEPS------CYNCNKTGHIARNCPEG 183
GHF C + + C++ G I+ + + CY C GHIAR+CP
Sbjct: 154 GHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNS 213
Query: 184 GR 189
+
Sbjct: 214 SQ 215
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARDCAQSP 120
+CF C GH+ARDC + ++CYRC GHI R+C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.2 bits (112), Expect = 3e-06
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +1
Query: 64 RCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNC 174
RC+ C GH ARDC + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 118 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 249
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARDCAQSP 120
+CF C GH+ARDC + ++CYRC GHI R+C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.2 bits (112), Expect = 3e-06
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = +1
Query: 64 RCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNC 174
RC+ C GH ARDC + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 118 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 249
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARDCAQSP 120
+CF C GH+ARDC + ++CYRC GHI R+C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 58 ADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 216
A RC+ C GH ARDC + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 118 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 249
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEADRCYR 75
KC++C GH R+CK + R
Sbjct: 81 KCYRCGERGHIERNCKNSPKKLRR 104
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARDCAQSP 120
+CF C GH+ARDC + ++CYRC GHI R+C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 58 ADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 216
A RC+ C GH ARDC + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 118 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 249
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 106
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEADRCYR 75
KC++C GH R+CK + R
Sbjct: 92 KCYRCGERGHIERNCKNSPKKLRR 115
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARDCAQSP 120
+CF C GH+ARDC + ++CYRC GHI R+C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +1
Query: 58 ADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 216
A RC+ C GH ARDC + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 118 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 249
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEADRCYR 75
KC++C GH R+CK + R
Sbjct: 122 KCYRCGERGHIERNCKNSPKKLRR 145
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARDCAQSPDEP--SCYNCNKTGHIARNCPE 180
CFKC GH AR+C + G G SCY+C ++GH AR+C
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTS 197
Query: 181 GG 186
GG
Sbjct: 198 GG 199
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 67 CYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 246
C++C GH+AR+C+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 247 C 249
C
Sbjct: 195 C 195
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 255 GTKTCYVCGKPGHISRE 305
G +C+ CG+PGH++RE
Sbjct: 134 GDNSCFKCGEPGHMARE 150
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCP 252
D +CY C K GH AR+C + +A TCY C++ GH S CP
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCP 76
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEAD------RCYRCNGTGHIARDCA-----QSPDEPSCYNCNKT 153
C+KC + GHFAR C CY C+ GH + C Q + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 154 GH 159
H
Sbjct: 96 DH 97
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADRC------------YRCNGTGHIARDCAQSPDEPSCYNCNK 150
C+KC GH ARDC E Y G G+ SCY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 151 TGHIARNCPEGGR 189
+GH AR+C GGR
Sbjct: 191 SGHFARDCTSGGR 203
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +1
Query: 67 CYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 225
CY+C GH+ARDC++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 226 SGHISRNC 249
SGH +R+C
Sbjct: 191 SGHFARDC 198
Score = 31.5 bits (68), Expect = 0.56
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 252 RGTKTCYVCGKPGHISRE 305
RG CY CG+PGH++R+
Sbjct: 126 RGGSDCYKCGEPGHMARD 143
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 181 GGRESATQTCYNCNKSGHISRNCPE 255
GG CY C + GH++R+C E
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSE 146
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +1
Query: 37 ARDCKEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 213
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 214 NCNKSGHISRNCPE 255
C GH R CP+
Sbjct: 294 GCGGKGHNRRTCPK 307
Score = 39.1 bits (87), Expect = 0.003
Identities = 36/112 (32%), Positives = 41/112 (36%), Gaps = 30/112 (26%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKE---EADRCYR---CNGTGHIARDCAQSPD---------EPSCYN 141
C C + GH C E ADR +R C G GH R C +S C
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGI 325
Query: 142 CNKTGHIARNC--PEG------GRESA-------TQTCYNCNKSGHISRNCP 252
C + GH +R C P G G S T C C K GH R CP
Sbjct: 326 CGERGHNSRTCRKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCP 377
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 36.3 bits (80), Expect = 0.020
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +1
Query: 25 TGHFARDCKEEADR--CYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCP-EGGRES 195
+G A + +EE C+ C GH RDC + D + + +N GRE
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNGREE 640
Query: 196 ATQTCYNCNKSGHISRNCP 252
A+ C C + H + CP
Sbjct: 641 ASSLCIRCFQLSHWAATCP 659
Score = 34.3 bits (75), Expect = 0.079
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCP 177
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 151 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPE 255
+G +A N E R+ C+ C K GH R+C E
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLE 619
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 36.3 bits (80), Expect = 0.020
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEADR 66
CFKC + GHFAR+C E+ R
Sbjct: 120 CFKCGKPGHFARECPSESSR 139
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 166 RNCPEGGRESATQTCYNCNKSGHISRNCP 252
R+ P GGR C+ C K GH +R CP
Sbjct: 108 RSRPSGGRGGGD--CFKCGKPGHFARECP 134
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 240 PQLSRGTKTCYVCGKPGHISRE 305
P RG C+ CGKPGH +RE
Sbjct: 111 PSGGRGGGDCFKCGKPGHFARE 132
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +1
Query: 133 CYNCNKTGHIARNCP-EGGRE 192
C+ C K GH AR CP E R+
Sbjct: 120 CFKCGKPGHFARECPSESSRD 140
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.9 bits (79), Expect = 0.026
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1 EKCFKCNRTGHFARDCKEEAD 63
++CFKC R GH+ARDC D
Sbjct: 115 DECFKCRRPGHWARDCPSTGD 135
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 28 GHFARDCKEEADRCYRCNGTGHIARDCAQSPDE 126
G ++ K D C++C GH ARDC + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.1 bits (67), Expect = 0.74
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 124 EPSCYNCNKTGHIARNCPEGG 186
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.9 bits (79), Expect = 0.026
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 1 EKCFKCNRTGHFARDCKEEAD 63
++CFKC R GH+ARDC D
Sbjct: 115 DECFKCRRPGHWARDCPSTGD 135
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 28 GHFARDCKEEADRCYRCNGTGHIARDCAQSPDE 126
G ++ K D C++C GH ARDC + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.1 bits (67), Expect = 0.74
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 124 EPSCYNCNKTGHIARNCPEGG 186
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.060
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 1 EKCFKCNRTGHFARDC 48
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.3 bits (70), Expect = 0.32
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 124 EPSCYNCNKTGHIARNCPEGG 186
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 61 DRCYRCNGTGHIARDC 108
D C++C GH ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 181 GGRESATQTCYNCNKSGHISRNCP 252
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 34.7 bits (76), Expect = 0.060
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1
Query: 1 EKCFKCNRTGHFARDC 48
EKCF C +TGHFA DC
Sbjct: 263 EKCFVCGQTGHFASDC 278
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 94 IARDCAQSP-DEPSCYNCNKTGHIARNCP 177
I R+ P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.5 bits (58), Expect = 9.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 55 EADRCYRCNGTGHIARDC 108
+ ++C+ C TGH A DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 33.9 bits (74), Expect = 0.10
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCK 51
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.5 bits (68), Expect = 0.56
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 181 GGRESATQTCYNCNKSGHISRNC 249
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 133 CYNCNKTGHIARNCPEGG 186
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 64 RCYRCNGTGHIARDC 108
+CY C TGH AR+C
Sbjct: 100 KCYECGETGHFAREC 114
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.18
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 7 CFKCNRTGHFARDCKEEA 60
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 190 ESATQTCYNCNKSGHISRNCP 252
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +1
Query: 133 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 246
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 64 RCYRCNGTGHIARDCAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 186
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +1
Query: 67 CYRCNGTGHIARDCA-QSPDEP------SCYNCNKTGHIARNCP 177
C C T H+ DC SP P CY C GH++ CP
Sbjct: 287 CDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCP 330
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Frame = +1
Query: 115 SPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHISRNCP 252
+P + C C T H+ +C P CY C GH+S CP
Sbjct: 281 TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCP 330
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Frame = +1
Query: 7 CFKCNRTGHFARDC---------KEEADRCYRCNGTGHIARDC 108
C C T H DC + +CY C G GH++ C
Sbjct: 287 CDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.32
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCK 51
KC++C +GHFAR+C+
Sbjct: 97 KCYECGESGHFARECR 112
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 184 GRESATQTCYNCNKSGHISRNC 249
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 133 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 252
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 64 RCYRCNGTGHIARDC 108
+CY C +GH AR+C
Sbjct: 97 KCYECGESGHFAREC 111
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 94 IARDCAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 246
++RD ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.56
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 175 PEGGRESATQTCYNCNKSGHISRNC 249
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 31.5 bits (68), Expect = 0.56
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 67 CYRCNGTGHIARDC 108
CYRC GH+ARDC
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.98
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 7 CFKCNRTGHFARDC--KEEAD 63
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 133 CYNCNKTGHIARNC 174
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 121 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 228
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 52 EEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGG 186
++ RC+ C G H R+C + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 31.5 bits (68), Expect = 0.56
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 130 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 249
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
Score = 27.5 bits (58), Expect = 9.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 205 TCYNCNKSGHISRNCP 252
TCY+C + HI+ +CP
Sbjct: 144 TCYSCGEKDHITVSCP 159
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 124 EPSCYNCNKTGHIARNCPEGGRESATQ 204
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 205 TCYNCNKSGHISRNCP 252
TCY C + GHI++ CP
Sbjct: 226 TCYRCKQEGHIAKICP 241
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 31.5 bits (68), Expect = 0.56
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 49 KEEADRCYRCNGTGHIARDCAQSP 120
K + + C++C T HIA+DC P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 7 CFKCNRTGHFARDC 48
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.56
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCK 51
KC++C GHFAR+C+
Sbjct: 90 KCYECGELGHFARECR 105
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 121 DEPSCYNCNKTGHIARNCPEG 183
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 13 KCNRTGHFARDCKEEADRCYRCNGTGHIARDC 108
K R G R E +CY C GH AR+C
Sbjct: 73 KGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.56
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCK 51
KC++C GHFAR+C+
Sbjct: 90 KCYECGELGHFARECR 105
Score = 29.9 bits (64), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 121 DEPSCYNCNKTGHIARNCPEG 183
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 13 KCNRTGHFARDCKEEADRCYRCNGTGHIARDC 108
K R G R E +CY C GH AR+C
Sbjct: 73 KGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 30.7 bits (66), Expect = 0.98
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 187 RESATQTCYNCNKSGHISRNCPE 255
RES +C+ C KSGH + +CP+
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 130 SCYNCNKTGHIARNCPE 180
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Frame = +1
Query: 67 CYRCNGTGHIARDC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 201
C+ C H+AR+C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Frame = +1
Query: 133 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNC 249
C+NC H+ARNC P+ S + + N G NC
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNC 133
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 61 DRCYRCNGTGHIARDCAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 234
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 235 ISRNC 249
IS+ C
Sbjct: 282 ISKPC 286
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 120 GRAVMLQLQQDGPHRTELSRRGAGVCDADLL*LQQVRPHL 239
G +V+ LQ DGPH ++R G AD+L Q P L
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPEL 617
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 199 TQTCYNCNKSGHISRNCP 252
T+ C +CN +GH SR CP
Sbjct: 2 TRRCSHCNHNGHNSRTCP 19
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 133 CYNCNKTGHIARNCPEGG 186
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +1
Query: 154 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 252
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 252
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 121 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 252
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 139 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 252
+ +++G + GG AT +C C SGH+S CP
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCP 426
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 49 KEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 228
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 229 GHIS 240
G ++
Sbjct: 128 GSLT 131
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 1 EKCFKCNRTGHFARDCK 51
E+CF C + GHFA +C+
Sbjct: 262 ERCFLCGQMGHFASNCE 278
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 121 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 225
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +1
Query: 52 EEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGR 189
++ RC+ C H R+C + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 121 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 225
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +1
Query: 52 EEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGR 189
++ RC+ C H R+C + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 49 KEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 204
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 205 TCYNCNKSGHISRNCP 252
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +1
Query: 49 KEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 204
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 205 TCYNCNKSGHISRNCP 252
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 73 RCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGG 186
R NG G + P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +1
Query: 52 EEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 222
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 223 KSGHISRNCP 252
G + CP
Sbjct: 256 GKGKLP--CP 263
>At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 380
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 330 QPPCLPYNQLCILSCHARTISKGRHARHTITDYSTDAERRPRHR--LKSEVRLL 485
Q C ++ C L + +TIS+GRH+ H ++ + +R ++ LK++ LL
Sbjct: 227 QTSCQQFDSHCFLG-NVKTISQGRHSAHLHDEFLRNIKREDSNKQCLKNQKVLL 279
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 3.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 133 CYNCNKTGHIARNCP 177
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 27.9 bits (59), Expect = 6.9
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +1
Query: 208 CYNCNKSGHISRNCP 252
C++C++ GH ++NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +1
Query: 67 CYRCNGTGHIARDC---AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 219
C+RC GH DC + + D P C G RE+ + Y C
Sbjct: 11 CFRCRQAGHWINDCPLKSYTDDPPPAIQCPCGGGFCEIKVANTRENPGRKFYKC 64
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 49 KEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 228
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 229 GHISRNCP 252
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 49 KEEADRCYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 228
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 229 GHISRNCP 252
G + CP
Sbjct: 205 GKVM--CP 210
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Frame = +1
Query: 7 CFKCNRTGHFARDC----KEEADRCYRCNGTGHI-ARDCAQSPDEPS----CYNCNKTGH 159
C++C GH + C ++ D+ G + R QS P Y N+T
Sbjct: 397 CYECGEKGHLSTACPIKLQKADDQANSKLGQETVDGRPAMQSYGLPKNSGDSYYMNETYA 456
Query: 160 IARNCPEGGRESAT--------QTCYNCNKSGHISRNCP 252
GG ++ + CY C + GH+S CP
Sbjct: 457 STNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACP 495
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 202 QTCYNCNKSGHISRNCP 252
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 202 QTCYNCNKSGHISRNCP 252
+ CY C + GH+S CP
Sbjct: 574 RNCYECGEKGHLSSACP 590
>At1g22690.1 68414.m02835 gibberellin-responsive protein, putative
similar to SP|P46688 Gibberellin-regulated protein 2
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 119
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -3
Query: 256 PRDSCGR-CGRTCCSYSRSASQTPAPLRDSSVRCGPSCCSCNMTARPGSVRSRALCAQCR 80
PR +CG C R C SR A CG SCC+ PG+ + A C
Sbjct: 57 PRINCGHACARRCSKTSRKKVCHRA--------CG-SCCAKCQCVPPGTSGNTASCPCYA 107
Query: 79 YICSNGQPLPC 47
I ++G L C
Sbjct: 108 SIRTHGNKLKC 118
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 120 GRAVMLQLQQDGPHRTELSRRGAGVCDADLL*LQQVRPHL 239
G +V+ Q DGPH ++R G AD+L Q P L
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPEL 629
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 120 GRAVMLQLQQDGPHRTELSRRGAGVCDADLL*LQQVRPHL 239
G +V+ Q DGPH ++R G AD+L Q P L
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPEL 629
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 139 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 246
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 139 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 246
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 139 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 246
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 199 TQTCYNCNKSGHISRNCP 252
T+ C +C+ +GH SR CP
Sbjct: 2 TRRCSHCSNNGHNSRTCP 19
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 121 DEPSCYNCNKTGHIARNCPE 180
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.9 bits (59), Expect = 6.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 208 CYNCNKSGHISRNCPE 255
CY C GH+S CP+
Sbjct: 154 CYECGDEGHLSYECPK 169
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 4 KCFKCNRTGHFARDCKEEADR 66
KCF C + GH A DC+ + R
Sbjct: 265 KCFLCGQEGHRAADCEGKIKR 285
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -1
Query: 582 NHDYLNDLKHNHSLTSCKNKHERASRDPSIYKSTVEPHSS 463
NH H+ S S N H S SI ST + HSS
Sbjct: 144 NHSSSTGSNHSSSTGSTHNNHSSGSNHSSILGSTHKNHSS 183
>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1114
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -3
Query: 184 PLRDSSVRCGPSCCSCNMTARPGS---VRSRALCAQCRYICSNGQP 56
P+ +S RC S S N+T +P + + LC CR ICS+ P
Sbjct: 700 PMNPASNRCSVSLSSDNLTMQPPTDDRLPLSPLCPTCR-ICSSKLP 744
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 61 DRCYRCNGTGHIARDCAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 231
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 232 HISRNC 249
IS C
Sbjct: 275 EISTPC 280
>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 168
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -3
Query: 277 HT*HVLVPRDSCGRCGRTCCSYSRSASQTPAPLRDSSVRCGPSCCSC 137
H +VL R++CGRCG C R + + CG C
Sbjct: 108 HCRNVLGDRNNCGRCGHKCGFGQRCCGGVCTYVNFNPNHCGKCTRKC 154
>At5g05987.1 68418.m00663 prenylated rab acceptor (PRA1) family
protein contains Pfam profile PF03208: Prenylated rab
acceptor (PRA1)
Length = 209
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +3
Query: 231 PHLPQL---SRGTKTCYVCGKP 287
PH+P + S KT YVCGKP
Sbjct: 120 PHMPVIRGRSTARKTVYVCGKP 141
>At4g38350.1 68417.m05422 patched family protein similar to
SP|O15118 Niemann-Pick C1 protein precursor from Homo
sapiens (PID:g2276463); contains Pfam profile PF02460
Patched family
Length = 1064
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 94 IARDCAQSPDEP-SCYNCNKTGHIARNCPEGGRE 192
I DC +S D C+ C K +R EGGRE
Sbjct: 715 IVFDCKRSADNRIDCFPCIKVPSSSRESVEGGRE 748
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 67 CYRCNGTGHIARDCAQSPDEPSCYNCNKTGHIARNCP 177
C+RCNG+ + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +1
Query: 67 CYRCNGTGHIARDCAQSP-------DEPSCYNCNKTGHIARNC 174
C C+ T H +C P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,333,096
Number of Sequences: 28952
Number of extensions: 287463
Number of successful extensions: 1421
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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